K03246

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K03246

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K03246

Determination of introduced cDNA(s)

  • J023027J11 - Rice Full-length cDNAs - Original: J023027J11

    full reading [+] show sequence

    Nucleotide sequence: J023027J11 - full reading 
    GGGGCAACGC CGCGGCGTGT CGTCCATCTC CATTCTCCAC GGCCACGGCC 
    GAGCGGTGGT TGCTCGCCGC CCGCACTATT GCCGCGGATT TTTCTCGATT 
    CTCCGCGAAC CGTTCGAAGC CACCGCCTCA CTGCTGGTCC AATCCCACCC 
    GCCGCTTCTT CCTCTCCGCC CGCACGCGGA AGCTCACTTT CCCCCTCTTC 
    TCCGGTACTA CTCCCCTGCG CTCCCCGCCG CCATCAACGC TCGGCTTCAA 
    TACCACCGCT TCTTCTGCAT TCGCCTCCTC CTCGTGGCGA ACGCGCGCCT 
    CCCACCTCGC CGTCGCCTCG TCGTACGCCG CCTTTGGTTC GGGCTCCGGC 
    TCCGGCTTGT CGGGAAAGCG CGGGAGCCAC CGCGGCACGT GCTTCGGCGG 
    AGGCTCCTTC CCCGCCGCCG CGAAGCTCTC CCACGCCTTG CCGCGTGGGG 
    CCCCTCCCCT CCGCGGCACG GGCTTCGGGA ACGGCACCTC CCGCACCACG 
    CGGACGAAGC CAGCGAGCTC CGAGAGCGCG CCGGAGCGGA GGACGGGGCG 
    GGCGGGGTCG GACGCGCCGG GGAACCCGCC GAGCGCGTGG TCCTCGAGCG 
    CGAGGGTGAG GTCCGCGAGG TTGGGCTCCG TGCGGCCGCG GGCCTCGGCG 
    ATGGCCGAGG CCGCGCGGCC CAGGGAGGCA ACGTAGCGCC CGGCGATGTC 
    GGAGAGGGCG CGGAGGGCGG CTGGCTCCGC CGCGGTGTAG CCGGACGAGT 
    GGAGGATCTG GGCGGTGGAG ACTCTGCTAA CCGCGTCCTG GAGGATGCAG 
    GGAAGGTGTC CGGCCGCCTC ACGGGGGGCC CTCGCCGGAG TTCCCATACA 
    TGGCGGCGAC GGCGAGGATC TTCAAAAACC CTAGAGGTCA GATCGTTCCA 
    ACCGGTGGTT TTATGCCATG TCCAGTTTAT GTCTTTTTTT TTTTTTTGAG 
    GGAATGTCCA GTTTATGTTT TATTTATTTT TCTGCTGCAC TTTTGGTTTT 
    TTTTAAATGG AAAGTATTGA TGGGTATTGG GCCGGCCATC TGCACTCGAG 
    GCCCATGAGT CCACCAGTTG TCGTCTTAAC CCTTTTAATA ATGAGTAGTA 
    GTTCGTCTCG TTC

    Gene models with high sequence identity

    1. AT4G34340.1 [+] show detail - TBP-associated factor 8
      E-value: 8e-17; Score: 85.10

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Bromodomain transcription factor 5.9e-12
    HMMPfam Bromodomain transcription factor 1.5e-14

    See the detailed result >

    AT4G34340.1

    Model type
    Protein coding
    Short Description
    TBP-associated factor 8
    Computational Description
    TBP-associated factor 8 (TAF8); FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone-fold (InterPro:IPR009072), Bromodomain transcription factor (InterPro:IPR006565), Transcription factor TFIID, subunit 8, C-terminal (InterPro:IPR019473); BEST Arabidopsis thaliana protein match is: Bromodomain transcription factor (TAIR:AT5G15570.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR