K03105

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K03105

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K03105

Determination of introduced cDNA(s)

  • J023012L05 - Rice Full-length cDNAs - Original: J023012L05

    full reading [+] show sequence

    Nucleotide sequence: J023012L05 - full reading 
    GTTGTGTGCC TACAAGGCTA GAGTAAAGAC CTTATCGCTC TTGCTAAACA 
    TACATACGTG CAAGCACAGT GCCTAGCTAA TCCATCAGCA GAATAGAAGG 
    GTGGAGGGGG TGGGAAGAGG CCAGGCCCCT CCGCCCCCTG GCGTCGCTCT 
    TGCTGATACT TTTCTTGTTC TGGTACATCT GCACAGATAA ATTATAATGC 
    CTTTTCATCT CTTCTGTCTG CTTATGGCTT TTTAAGATAA AACAGAGCAT 
    TGATCTTGCA TGCTCTACAC TTCGCGCACT GTTTGTTTTT GCCAATAAGT 
    TTGCACACAT GTAGCTGTCA TTTGGGTAAA CAAACTTGCA GATAGTGCCA 
    AATAGTCATA AGAAAATAAT TTTCATGGGC TCTTCAGATA ATACATTTTT 
    ATTCGAATAG ATTTTACAGT ATCAGATATT AATCATCCAA GCATGCAAAC 
    TGTGTCTTGT TATGTGTTAG CTTCTTTATG ACCAATACAT TTTAAGAGCT 
    CTGAACTGTA GCCCTTAAGA ATAGTGAAAA TATAGGCAAC ACTTCCACAC 
    CATAAATTGT CATGGATGCA ATTGGAGCCT GCAATAATTT CATTAAGTTA 
    TAATTGATGT TTCACTAAAG AACTGAGAAT GGATAGATGG ATCATGTGCA 
    GAAAATCTGA GTTACCCTAG TTTAGGAGGT GTGGTTTGCT CAGCATCATT 
    TTGTTGGCTT GGGGGATTGA GTTCAAGACG AGCAGGAGTG TTGGCTTCCT 
    CGATAACCGC AAAGTTGTAT GGAGTTGTTG AATCTCGATT CGCTTCATTT 
    TCTGCCCCTG TCTCATAGAG CTGAGGAGAG AGATTAGCTG TCATCATATA 
    ATGAAGCGTA TATCCTGTGA AATCATCTAT CTGCATTTAT CAAGTACCTT 
    CTTGTACAGC TCAGCATTTT CTTGGCGAAT CAGGTTGACC TTTCTGTACA 
    GTTCCATGTT TTCTTGGTGG ATGAGACTTC CCTGCAAATA AGCCAGCAAT 
    AGAGTTAGCT TACTAGCTGA TTCAAAGATT TAGCAATTGT ACATGATGTT 
    GTAGAACCTT TCGATTCAGT TCGTGGATTT CATCAATCAT GAGCTGGTCC 
    TGAAAACAAC AATATTGATC TTAAGTTAAT CCATTATATA ATCAATCAGG 
    TGCCCAACAA AAAAATATGG TTAGTAGGTT GACCTTTTTT GTCCGGATGC 
    AGCGTATGCT CATTTCTAGC TGATTTTCTA GAGTTTGCAG TTCCTTGACA 
    CCCAATCCAG AAAGATCTTG CCCCATCAAC TGCCTGCCAT CAACCAATGG 
    ATGTTATAGT GTTGTTCTGA TGATATACAG AGTGAATATT GACACTTAAT 
    TTTAGCTGAT CAACAGACAG CTGTTAATTG ATAATAAAAA TAATTTGTAC 
    CTTTCTAGTT TAGGTATTGT AAATTAGGCC TGAAGGACAA AATGGAGTGT 
    TTGAACAATA ATTTACCAGG CAGAAAGCAC AGGTGAAGAA AATGTGATAT 
    TCACTCTCCT TTGTAAATTT GGTCTGTCCG CCTTTGATGG GTGCTCAGTT 
    CTGTTTTTCT TTTAGAGATA ACCGGAAATG CATAAAAATC GAATGGCTGA 
    AGGTATATAT TTCTTACTTT TAAATGATAT AGAAAATTCA CGTGCCTTCT 
    TCATTTCTTT TGTTTGTGAA GGTTAAACAA TGCATTATCT ATAGGAAATT 
    TGGAATCAGC ATATATCACT TTCATACTCT GTTTTTTCTT CTTTTTTCTA 
    AGTATCATAT ACCCAAGCAC TAGGTGCTTG TTTTTATGAT CTGGTACTAG 
    TTTATATTTA CTATACAATC AGGTGCTGGA AGTATTATTG TCGCTAGCAG 
    TTGCTGGATT CATGAGCAAG TCCCCACAAA AAAAAAAGTT CGTCATCAAG 
    GGTTCATGAT GCATGTATTT CATAGTAGTA GATATATGAT GGTTTATGTT 
    TTTCTATCTT GAGGAATTTT CTGATGGAAC ATTGAAAAAC TTGCAGGGTT 
    TTATGGCCAT ACCGATGATT TTCTTGCAAG CTGTGCAGTT GTTGTCTCAA 
    GCTTGCTGCC TCCCTTTGCC AGAACTATTG GATATGAAAA CAGAGTCAAG 
    AAATGCAGAA TCCAGGTTTG CCAAAAGCAG CAATATAAAT ATGTTGTGTA 
    TACCCATAGA AACATGCTGG GTTATCAACT CACTAGTTTT TTTTTAAAAA 
    AAAGGAAACT CAATTACATT AGACAAGAAG ACTATTTGAA CTGAGGAAGT 
    TATTGTGTAT GGTAAAAGAA GTAACAAGAG GCAAACAAAG AAATTTGTTG 
    TAAACAAATA AGGGAAGTAG TATTATCTTT CCAGTTTGAA GACAGTTTTT 
    TTTTCCAGAT AAGACGATGA GCTACCAACT CTATTGAATT TGGTACTCCA 
    TTATCAGTCC TCGTTTTGCG GGGTGTTACC CCCTATTGTA AAAAGCTTGT 
    TTGTCTAAGC AAAATGCTTC CAAGTCCCAC CAAAGCTAGA TTAACTACAA 
    AGTATCTGCA GAGTGCACAA GTCAGGTAAA AAACTTGTTT GTCTAAGCAA 
    AATGCTTCCA AGTCCCACCA AGCTAGATTA ACTACAAAGT ATCTGCAGAG 
    TGCACAAGTC AGATAAAAAA CTTGTTTGTC TAAACAAAAT GCTCCCAAGT 
    CCCACCAAGC TAGATTAACT ACAAAGTATC TGCAGAGTGC ACAAGTCAGG 
    TAAGTGATGA TTATATCATC CTGGTACAAG CTTTATTGCG GTGAAAGATA 
    AGCAGTTAGT CTGAAATCTG TACAGATCTG TCAGCTGTTA CCGAAGCAAA 
    AGGTTCAATG TGAACTTAAA GATGCAGTAC TGATCCTTTT AAGAGGATTT 
    AACACAGATT TAACAGGTAC GTGCCCCTTG TGATTCTTTG TTAGTTTTCT 
    TGTTATAATG ATGTTTTTAT CCTCTGAATT CAAGCAGGGT GTTCTGTATG 
    CGAGCTGTGA TGGGATGGTT CTCTTCAGAA GCATTTTATT TTAACTAAAT 
    TCAGAAGCAT TTCGATGGCA TGAGGACTGT TCGATTGACA ATTTGTATGT 
    ACATTTCCAC CGTTTACGCA GCTTAGGAAT TGGACCATAA TTAGTTGTGT 
    ACCTGCAAGT TTTGTATACG AATTATCCTG AAGGGTGTTC GGTGGATTG

    Gene models with high sequence identity

    1. AT3G57230.2 [+] show detail - AGAMOUS-like 16
      E-value: 1e-13; Score: 45.10

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther MADS BOX PROTEIN 0.00055
    HMMPfam Transcription factor, K-box 1.6e-12

    See the detailed result >

    AT3G57230.2

    Model type
    Protein coding
    Short Description
    AGAMOUS-like 16
    Curator Summary
    MADS-box transcription factor. Expressed in leaf, root and stem, with higher RNA accumulation in guard cells and trichomes.
    Computational Description
    AGAMOUS-like 16 (AGL16); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, stomatal lineage progression; LOCATED IN: nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 21 (TAIR:AT4G37940.1); Has 7191 Blast hits to 7190 proteins in 917 species: Archae - 0; Bacteria - 14; Metazoa - 643; Fungi - 316; Plants - 6129; Viruses - 0; Other Eukaryotes - 89 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR