K00550

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K00550

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K00550

Determination of introduced cDNA(s)

  • J033034P16 - Rice Full-length cDNAs - Original: J033034P16

    full reading [+] show sequence

    Nucleotide sequence: J033034P16 - full reading 
    GCTAGATCTA ACTAGGAAGG GCATCTGTGT GCTGAAGGAT TGTTCAATGC 
    TCGTAATGGA TGAGGCAGAC AAACTGTTAG CTCCAGAGTT TCAGCCTTCC 
    ATAGAGCAAC TCATCCATTT CCTTCCAGCT AATCGTCAAC TATTGATGTT 
    TTCAGCAACC TTTCCAGTAA CCGTTAAGGA TTTCAAAGAG AAATACCTAC 
    CTAGGCCTTA TGTTATTAAT CTCATGGATG AACTAACACT AAAGGGAATT 
    ACACAATACT ATGCTTTCGT GGAAGAAAGA CAGAAAGTTC ACTGTCTGAA 
    TACACTTTTC TCGAAGCTTC AAATAAACCA GTCCATTATA TTCTGTAACT 
    CTGTTAACAG AGTTGAGCTA CTGGCTAAGA AAATCACCGA GCTTGGCTAT 
    TCATGCTTCT ACATTCATGC AAAAATGTTG CAAGACCATC GAAACCGAGT 
    GTTTCATGAT TTTCGCAATG GTGCTTGCAG AAACCTTGTG TGCACAGATC 
    TGTTTACAAG AGGAATTGAC ATCCAAGCTG TGAATGTTGT CATTAATTTT 
    GACTTCCCTA AGACTTCTGA AACATACTTG CATAGGGTTG GTCGTTCAGG 
    GAGATTTGGA CACCTTGGTT TGGCGGTGAA CTTAATCACT TATGAGGACC 
    GTTTCAACTT GTATCGGATT GAGCAAGAAC TTGGGACAGA AATAAAAACG 
    ATACCCCCAC AAATCGATCT GGCAGTGTAT TGTCAATGAT CAATGTAACA 
    TTGTAACGGT GTTTTTATCA TTTACTTATT GTTAGGCAAG TACATCAGAT 
    GTACATAGCA CCTCATCAGG GTTTTATTTG GTGCCTTGAT GACACATCTA 
    AGCTTATATT CCATTAGTGA GGAAGTGTTT TCTGTCGGCA CTGATACTAA 
    TCATGTTAAC TGTGGACTTG CATTTTTGGC TGCTTGAAGA CGCTGCTTGA 
    AGACCCAGGG CTGCGGCCAA ACTGAACCTT TTTCTTGCTC CTTGTATCTG 
    CTCAATATTT GCTTTATATT CATTTGCTAG CGACAGTTTT GGTTGTGTTA 
    TATTAGGATA CTGCTGCTTG AGTCTGTTAC CGTCACTGTG GTTCCTTAAT 
    TTTCCTTTCC TTTTTCCCTT TTCTTCTCAT GTTTGGATTG GACTAGTAGA 
    AGTATTTCCC TCACTGTATT CCTCGTGTCA ATTTCTATTA TCCTTGGTGT 
    AGACTGTTAA CTTTCTTTAA TTTACCCTCG TTTCGT

    Gene models with high sequence identity

    1. AT4G00660.2 [+] show detail - RNAhelicase-like 8
      E-value: 1e-129; Score: 460.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart DNA/RNA helicase, C-terminal 3.6e-30
    PatternScan RNA helicase, ATP-dependent, DEAD-box, conserved site 0
    ProfileScan Helicase, superfamily 1/2, ATP-binding domain 13.779
    ProfileScan DNA/RNA helicase, C-terminal 23.729
    superfamily P-loop containing nucleoside triphosphate hyd 7.2e-44
    superfamily P-loop containing nucleoside triphosphate hyd 9.8e-13
    Gene3D no description 2.7e-14
    Gene3D no description 6.3e-47
    HMMPanther ATP-DEPENDENT RNA HELICASE P54 3e-193
    HMMPanther DEAD BOX ATP-DEPENDENT RNA HELICASE 3e-193
    HMMPfam DNA/RNA helicase, C-terminal 1.7e-25
    HMMPfam DNA/RNA helicase, DEAD/DEAH box type, N-terminal 8.3e-11

    See the detailed result >

    AT4G00660.2

    Model type
    Protein coding
    Short Description
    RNAhelicase-like 8
    Computational Description
    RNAhelicase-like 8 (RH8); FUNCTIONS IN: helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding; INVOLVED IN: viral reproduction, virus-host interaction; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT2G45810.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR