K00528

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K00528

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K00528

Determination of introduced cDNA(s)

  • J033126N11 - Rice Full-length cDNAs - Original: J033126N11

    full reading [+] show sequence

    Nucleotide sequence: J033126N11 - full reading 
    GGTCCGGCTC GGCTCGTCGG CGACGCCTCG CACCGTCGCC GCTCACCGGC 
    GCTCCTCCGC CGCCGCTCGC CGCCGGAGGA GGGATAGAGT GCTCGTCGGT 
    GCGGTTTGAT GGAAATGGCC CCCGCGGCGC AGGTGGCGTC GAACCCGCGG 
    ACGGTGGAGG ACATCTTCAA GGATTACTCG GCGCGGCGCG GCGCGCTCGT 
    CCGCGCGCTC ACCTCAGATG TGGACGAGTT CTTCGGGCTC TGCGACCCAG 
    ATAAGGAGAA TTTGTGCCTG TACGGCCTCG CCAACGGGAG CTGGGAGGTG 
    GCGCTGCCGG CGGAGGAGGT GCCGCCGGAG CTGCCCGAGC CGGCGCTCGG 
    CATCAACTTC GCCCGCGACG GGATGAACCG CCGGGACTGG CTCTCCCTCG 
    TCGCCGTCCA CTCCGACTCG TGGCTCGTCT CCGTCGCCTT CTTCTTCGCC 
    GCGCGGCTCA ACGGAAACGA ACGGAAGCGG CTCTTCAACA TGATCAATGA 
    TCTACCTACT GTATATGAAG CATTGGTTGA CAGGAAGCAC GTCAGGGATA 
    GGTCTGGTGT CGATAGCAGC GGAAAATCCA AACATTCAAC AAAGAGAACA 
    GGCGAAGGGC AGGTAAAGCG CTCCAGGGTT GTCGCAGAGG AGTACGAGGA 
    CGACGACGAA GAACACAACG AGACATTCTG CGGAACTTGC GGTGGCCTCT 
    ACAACGCGAA CGAGTTCTGG ATCGGGTGCG ACATCTGTGA GCGGTGGTTC 
    CACGGCAAAT GCGTCAGGAT AACCCCGGCT AAGGCGGAGC ACATCAAGCA 
    CTACAAGTGC CCTGACTGCA GCAGCAGCTC CTCCAAGAAA ACTAGGCTAT 
    AGGTTAAATT GTGGTGTGTG CAATCTCCTC TGACCAATCT GATCAAACGA 
    CAATCTGTCC TGCCACTAGG AAAAAAAAGA TGGTGAAGCT GTTCTTCGGT 
    CCAATGTCGT AGCTTAGCTA GATGTGAAGT CATCTAGACA TTGTGCTGTG 
    TGGTAGATGA GGCAAAAAAG AGTGAACTGA AAAGACGGGA AAAACGTATT 
    CGATCTTTAG CTTTGTTTTA TAAATGTTTT CTTCATTGTC ACCGATGTGC 
    TTTGGGTTTT TTCAGACTTC AGAGCATGGG TATCGTTGTT GAATTGTAGC 
    TGCATGCATT GCATGATATA TTTGTCAAGT GCTCAACAAC TGGAGCATTC 
    CC

    Gene models with high sequence identity

    1. AT3G11200.1 [+] show detail - alfin-like 2
      E-value: 1e-77; Score: 286.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Zinc finger, FYVE/PHD-type 2.3e-12
    Gene3D no description 1.8e-16
    ProfileScan Zinc finger, PHD-finger 9.294
    PatternScan Zinc finger, PHD-type, conserved site 0
    HMMSmart Zinc finger, PHD-type 1.7e-09
    HMMPanther PHD/F-BOX CONTAINING PROTEIN 7.7e-11
    HMMPfam Protein of unknown function DUF3594 4.3e-71
    HMMPfam Zinc finger, PHD-finger 1.7e-10

    See the detailed result >

    AT3G11200.1

    Model type
    Protein coding
    Short Description
    alfin-like 2
    Curator Summary
    AL2 encodes a member of the Alfin-Like family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA.
    Computational Description
    alfin-like 2 (AL2); CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Protein of unknown function DUF3594 (InterPro:IPR021998), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: alfin-like 1 (TAIR:AT5G05610.2); Has 1527 Blast hits to 1482 proteins in 179 species: Archae - 0; Bacteria - 0; Metazoa - 758; Fungi - 235; Plants - 458; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR