K00328

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	cauline leaf (PO:0000013)	decreased size (PATO:0000587) (Cauline leaf::Shape::small)
	rosette leaf (PO:0000014)	abnormal (PATO:0000460) (Rosette leaf::Others)
	stem (PO:0009047)	abnormal (PATO:0000460) (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K00328

Determination of introduced cDNA(s)

J013132B11 - Rice Full-length cDNAs - Original: J013132B11

full reading [+] show sequence

GACACCGGCA CAGCCACACA AATCACAGCC TCCTTCAAAC CGGCAGCCGG 
CGCCGGCTGC TGATCCTCTC CATCGCCGCC GTGGCCGTGC TGCCGGCGTG 
CCTCCAAATG ACTCCGCCCG GCAGTATCAG CACCACCTCG TCGAACCTTC 
GGGCCCAGCA AAAACCCTCA ATTCCCAAGA AACCGTGTGC TTTCGGAGCG 
CCACCGAGAC ACCTGCATCG CCCGTGCAAG AAGAACGCTG CCGTCTCGGT 
GGCGTGCACC GGGCAAGGCG AACAACGATC CAGCCCTGCC ATCGCGGCGC 
CGCAGGAGGC TCAGGCAGGC ACGTTTAGCG TCGAGTTCCG GACGCGGGAC 
GGGTGCCGGC TGGGCATCTC CAGGTACCCG GACTTCGCGT ACAACGCCCA 
GGGCGGCCGC GGCGTCGGCG TCGTCGCCAG CAGCGGCGAG GATAGTGGCA 
CGGTTCTGGT CGAGTTCGAC GTGTCAAGCC TGTACATCCC GGCGATGTCC 
GGCGCGACGA CCAAGTTCCT CGGGCTGCCG CTGCCGCCGT TCCTCAAGAT 
CGACATCTTG CCCGAGGCTC TCCGCGGAAA CATCGATCCA ACAAGTGGTC 
AGGTTGATCT GAAGTTCAGG TCGAGGTTCT GCTTCTCGGT TGGAAGCATC 
TACCGAGCAC CGCCGCTGTT CGTCGACACA ACGCTGACCT CCGAGGAGTC 
CAGTGGAGCC ATAAGACGAG GAACTGGAGA AAGGATGGAC GGCGAAGGGA 
GATGCAAGCT GGTAGGGGTG GCCGTCGTCG ACCCCATTGA TGACGTCTTC 
ATGAACACCT TCCTCAGCCT GCCGACCGAG TGCATCGCTT ACTTGAACGC 
CACCATCTCC ATCACTGAAC CAAGCTGATC TTGCCTGTTT CAGTTGGTTG 
TATAGATCTT AATGCGTGGT GAAACGCATG AATGTTGCAG GACGAAACTT 
GCACGGAAAA GAACAGACTG TACTATTGTA GTATTGGCCA AGGGAATGCC 
TCTTATTCAT

Gene models with high sequence identity

AT5G62140.1 [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...
E-value: 1e-39; Score: 160.00

InterPro Scan Digest

See the detailed result >

AT5G62140.1

Model type: Protein coding
Computational Description: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; Has 60 Blast hits to 60 proteins in 24 species: Archae - 0; Bacteria - 14; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link: InterPro Scan - TAIR

J013155I21 - Rice Full-length cDNAs - Original: J013155I21

full reading [+] show sequence

GTGAGTAAAC TAGATAAGCA ACCATATCCT GCCTAGTTCA CTACCTAAGA 
GATATTGAGC TAGTAAAATG TTGCACGTTT GCTGCCAAAC ATACGGCTAT 
TCTCTCCTTC CTTGGTCACC AGGATGACAC AGGTGCTGGA ACCTTTTATG 
TACCAAGCAT ACCAATGACC AATGTGGAAT CAAGAATGAG TTTATCCAGA 
CTGGGATTCC TCCCTGGACT TGTGAACTGA CCCCTGCATT GCACCAAGGT 
GTGTATGGTG ATTGTGGTGG TGCATGGGTT GATGAGGAGT AAGATAAGTG 
GCTTTCTGTA AGTGCTTCTG CAATAATTGT TTAACTGAAA GCTGAAGAAT 
CTGCTATTCA TGCAGTCATA CGGTGAATCC GAAGACCGAG TCTGTGAAAT 
TAAGATATGC TGCCGAAAAA GGATGGTTGA ATGTTATAGA TGACTTAGAT 
CTATCAGCCT TTGTATTTCG TTTAGGTGGA ATATATGGGC CAGGAAGAAG 
GTTTCAGTCT GCTAAAATTT CAATCCATTT TATTTTGTAG TCTTTGAACC 
AAAAGTTATA TTTACTCCAG AACTGCATGA CTTGGCTACT GAAATTCTGA 
ATTCCACCAA TAAAATCAAC CTTTTAAAAT TAAAGATTTG GAGCACTTTT 
TATCTGATTT CAACCAATAC GGTGTACAAC TTGTGCTACA AACTTGTCAA 
GTATGTAATG GATGAAAATG AGAACTTTTT CATGGGAGGC TTTTGTTACA 
GTTCCCAATA CTTGCTTTCT AAAAGTGCCA CTATTATGAC CCTTTGTGTT 
GATTATTGCA GTGCAGTGGA CACAATAGCC AAGAGCAAAT CTTTTCACGA 
AGACAGAAAT CGAGGGAATC CAAACAGTAC ACTGCACGAA TTCATGTGGC 
TGACATTTGT CAGGCTATCC TGGCTAGCAT GAGCATCAGA AGTGCAAGGA 
GGATATACAA CGTAGTGGAT GACGACCCTG CCCCAAGATC TGAGGTTTTC 
GCATTTGCTC GGAGCTTGGT TGAGAGGAAG CATCCTGGCC TGATAATGGA 
TTCTGTAGTA CTACCAGCTA CTCAGGACAG AATCGTAGCT GCTGAGAAGC 
GGGTCTCTAA TGCTCGGCTA AAAGAGGAAC TTGGTGTAAA GCTTCTTCAC 
CCAACCTATA AATCAGGCCT GCAGAGTATT TTGGATTCTT GGAGTGTCGA 
ATCTTCTTTT TCAAATAGGA ATGTTGACGT TTAGCATGTG TATATAACTA 
TGTGAATTGT TTTGATTTTG TGCTTTGCTG GAACTATGAA CCCAAAAAAT 
TATATATTCC ATTATGTCCT CTTCC

Gene models with high sequence identity

AT1G19690.1 [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
E-value: 6e-25; Score: 112.00

InterPro Scan Digest

See the detailed result >

AT1G19690.1

Model type: Protein coding
Short Description: NAD(P)-binding Rossmann-fold superfamily protein
Computational Description: NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: coenzyme binding, binding, catalytic activity; INVOLVED IN: cellular metabolic process, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); Has 3422 Blast hits to 3422 proteins in 1044 species: Archae - 54; Bacteria - 2233; Metazoa - 3; Fungi - 5; Plants - 67; Viruses - 4; Other Eukaryotes - 1056 (source: NCBI BLink).
Link: InterPro Scan - TAIR