GT8917

CSHL Arabidopsis genetrap mutant lines

Original: GT8917

Phenotypes

Morphological phenotypes

Original description

  • tiny plants
Anatomical entity
/structure development stage		 Phenotypes
whole plant (PO:0000003)
  • decreased height (PATO:0000569)

Original: GT8917

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1570175 [Map]; Strand: w
      • AT4G03540.1 - [+] show detail - Uncharacterised protein family (UPF0497)
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT8917 - 3-prime edge 
    GTATTTTACC GACCGTTACC GACCGTTTTC ATCCCTAGCC ATATCGGTGT 
    ACTTAGCTTC AAGGAGATGG CTAAGAAGGA AGCTCTCTCG CGGCTAGTGA 
    TCATAACGAT CAATGCGGCA AGAGCCGCAC CAAACGCTGC CAATCGCAGC 
    ACAAGCCCTC CTATTCTCTT TGTCAACTTC ACCATCGAAC GGTAATAAAA 
    ATTTCTAGAT GAAACAGAAA AATATGTAAG AACACAAAGA CATCAGGGAG 
    AAGTGTAAGA ACGTAACACA TAAACATAAA CTGAATAAAC AAACTAATTG 
    GTAATCAACA ATATATATAT AATTGAGTGG GATGTGCTGT TAGCTGAGAT 
    TTTTCAACTA TCTTCACCGT CATCGTCTCA TTTTCAACAC ACGACTATTT 
    TTCTCTTTAT GACTTTATGA CATGTGGAAC TACAAAACAA AAATGCTTCA 
    TCAGAAATAC AAAAAGTGTT AAATACAAAA ATGTCATAGT TTGGAATTAA 
    AGATGTAGAG TATGCATTGT TGAAAAACAA A

  • 3 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT8917 - 3-prime edge 
    ATCGGTGTAC TTAGCTTCA

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1570273 [Map]; Strand: w
      • AT4G03540.1 - [+] show detail - Uncharacterised protein family (UPF0497)
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: GT8917 - 5-prime edge 
    ATGTACAAAA TTTCTTCTTA TTTTCTTGTT GAGTCATTGT ATGTAAATTA 
    TACATCTATG AGTTATGTGA ATATGTGGTA ACAGAATAAA ACATGTTTGG 
    CAGGTATTTT GTAATAGCAA ACGCTGTTGT GAGTGTTTAC AGCTTTCTAG 
    TTCTGTTTCT TCCAAAGGAG AGTTTGCTCT GGAAATTCGT CGTCGTCTTG 
    GATTTGGTAC CAATTTTTAT TCTCTGCATA CATTCATTTG CATAATAAAT 
    TATAAGTTCC CTTGGTTATT ATAAAGTGAT GTTGTTAATT ATTCCTGGTT 
    AATATATATT AACAACTGAT CCTAAATATT ATTTAAAAAG ATTTCTTGTT 
    TTTCATCTAT TTCGACCAAC ATTATTTATT GGCAACAAAA ATGCAATGAA 
    ATTAGTATTT TGTAGCAACA TTTTCACAAC TATTTTGCAG CATGTAGATT 
    GTGATTTTCT CGTTATACTA AGTTTTGAAT GGTATAATAT AAGAATTGAA 
    AATTATGATG TTACTAATTT GTGTTATTCT TATAATGATC ATTAGCTCAA 
    TTTGTATTAA ATATCCACCA TTTTAATTCG AGTGTAATGT ACATTTTTTT 
    GTTC

AT4G03540.1

Model type
Protein coding
Short Description
Uncharacterised protein family (UPF0497)
Computational Description
Uncharacterised protein family (UPF0497); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702), Uncharacterised protein family UPF0497, trans-membrane plant subgroup (InterPro:IPR006459); BEST Arabidopsis thaliana protein match is: Uncharacterised protein family (UPF0497) (TAIR:AT1G03700.1); Has 607 Blast hits to 607 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 607; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR