GT8908

CSHL Arabidopsis genetrap mutant lines

Phenotypes

Morphological phenotypes

Original description

semi-sterile

Anatomical entity /structure development stage	Phenotypes
seed (PO:0009010)	present in fewer numbers in organism (PATO:0001997)

Original: GT8908

Determination of insertion point(s)

3 prime edge [+] show sequence
1. Chromosome: 4; Position: 78410 [Map]; Strand: c
  - AT4G00180.2 - [+] show detail - Plant-specific transcription factor YABBY family protein
    Distance: -3026; Region: intergenic
  - AT4G00190.1 - [+] show detail - pectin methylesterase 38
    Distance: 2023; Region: intergenic
Flanking Genome Sequence: GT8908 - 3-prime edge
```
TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTATTTCTA GCCACTTATC 
TTCGCCATGC CACCGTTTTG CATTTCACTT GACATCACAT CTTTTCAAGA 
CCTCTAACAA ACCAGAACTA CTTTACATAG TGGATGGAAT AACATATTTC 
TAACTTGTTC ATTTTATTCA ATATATATTA ATTGCTAATT AGTTTCTT
```

5 prime edge [+] show sequence

Chromosome: 4; Position: 78290 [Map]; Strand: c
- AT4G00180.2 - [+] show detail - Plant-specific transcription factor YABBY family protein
  Distance: -2906; Region: intergenic
- AT4G00190.1 - [+] show detail - pectin methylesterase 38
  Distance: 2143; Region: intergenic

TATACACGTG CATATATACA CTCAGATGTT GATTGTTTTC CAGGTGTTTG 
TGTGAGAAAT GACATCTCTC TCTCTCACCC ATTCAGGCGG TGGAAAAATT 
CAATAACACT TTTAAAAAAG ATTTTTGTTC AATAGGTTTT GACCTGAAAA 
TACTTAGAAC AAAAAATAAC ACAAGAGGGA AAGTGCCGTA AAAGTAAAAA 
AAAAGAAAAA AAGAGAGAGA TCATGTCGCT GACATACTAT ACATGCCTAG 
CTAGCTCGGT ACATTTATAT ATAATGTTTG TGTGTAAGGT AGATTGAGAT 
ATATGAATGG TCAAATCGGA AATAAAACAG TATATGTTCT TAAATAAGCT 
TCTCCTTTGT TCAACTTTTT TGCTTTCATT TCCGTCACAT GATTTCGCGA 
TTAATTACTT TTTATAATTA GTCAACTTCG ACGCCTTGTG TCGTCCTCGA 
TTTTAATGTT CTGTCTTTCT CTGCATTCAT AGTTTATCTT ATTTCATTTC 
ATATCCTTAC TTCTTTTTTC TACAAACAAT AATTTCTAGA CGAATTGAAA 
CAAATTTCCA AAACTTTATG AGTATATATA GGATATTTTT AGTGGCAAAG 
GACGACTTAA ATTGTAACGA AAAGAATTTG AACTTTTTTC

AT4G00180.2

Model type: Protein coding
Short Description: Plant-specific transcription factor YABBY family protein
Curator Summary: YABBY gene family member, likely has transcription factor activity, involved in specifying abaxial cell fate. Along with FIL, involved in patterning of the fruit. GUS reporter gene expression in seedlings is observed in the young leaves and as the leaf matures, expression is restricted to the abaxial tissues of leaves, expression is also observed on either side of the leaf margin in the younger tissues of leaf blades.
Computational Description: YABBY3 (YAB3); FUNCTIONS IN: protein binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: fruit development, abaxial cell fate specification, regulation of transcription; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), YABBY protein (InterPro:IPR006780); BEST Arabidopsis thaliana protein match is: Plant-specific transcription factor YABBY family protein (TAIR:AT2G45190.1); Has 465 Blast hits to 465 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 6; Plants - 438; Viruses - 2; Other Eukaryotes - 15 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G00190.1

Model type: Protein coding
Short Description: pectin methylesterase 38
Computational Description: pectin methylesterase 38 (PME38); FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: flower, synergid; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily (TAIR:AT2G45220.1); Has 2963 Blast hits to 2921 proteins in 467 species: Archae - 10; Bacteria - 871; Metazoa - 1; Fungi - 198; Plants - 1837; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).
Link: InterPro Scan - TAIR