GT8109

CSHL Arabidopsis genetrap mutant lines

Original: GT8109

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT8109

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT8109 - 3-prime edge
    TGAAGAAAGT TGAGTTATTT GTGGTATTGG AATGATTTGA
  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 1543964 [Map]; Strand: w
      • AT2G04450.1 - [+] show detail - nudix hydrolase homolog 6
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: GT8109 - 5-prime edge
    GAGACTCTTT AGAAGACACT TGTAGTCTAG TGGCAATGAG TTGAGACATG 
    TATTTGCAGG GGACGAAGGG GATATGGTTA AAGCTTGCCG ATGGGCTTGA
    CAATCTTATT GCACCTTTTT AAGCAGTAAG TAAGATGTTT ATGTTTGTAA
    CTATGGTTTT GGATTGGTTC TTGTTCAGCA ATTTAGTTGG TAATTTGACA
    GGCCCGGTTT GTGTGCCACC ATGCCGAGAG GGAATACACC ATGCTTACAT
    CTTGGATCGC TGATGTTCCT AGTACTCTTC CTGCCAATGC GTCTCATCGC
    ATTGGAGTTG GTGCCT

AT2G04450.1

Model type
Protein coding
Short Description
nudix hydrolase homolog 6
Curator Summary
Encodes a protein with NADH pyrophosphatase activity. Although this protein was also shown to have ADP-ribose diphosphatase activity in vitro, mutant analyses suggest that NUDX6 is involved in NADH metabolism in vivo.
Computational Description
nudix hydrolase homolog 6 (NUDT6); FUNCTIONS IN: hydrolase activity, ADP-ribose diphosphatase activity, NAD or NADH binding, NADH pyrophosphatase activity; INVOLVED IN: response to other organism, positive regulation of salicylic acid mediated signaling pathway; LOCATED IN: cytosol; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: NUDIX hydrolase domain-like (InterPro:IPR015797), NUDIX hydrolase, conserved site (InterPro:IPR020084), Nudix hydrolase 6-like (InterPro:IPR003293), NUDIX hydrolase domain (InterPro:IPR000086); BEST Arabidopsis thaliana protein match is: MutT/nudix family protein (TAIR:AT4G12720.3); Has 2998 Blast hits to 2996 proteins in 719 species: Archae - 33; Bacteria - 1649; Metazoa - 236; Fungi - 25; Plants - 166; Viruses - 14; Other Eukaryotes - 875 (source: NCBI BLink).
Link
InterPro Scan - TAIR