GT81

CSHL Arabidopsis genetrap mutant lines

Original: GT81

Phenotypes

Morphological phenotypes

Original description

  • 1 rootless 3 small plants
Anatomical entity
/structure development stage		 Phenotypes
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
root (PO:0009005)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT81

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 114827 [Map]; Strand: c
      • AT4G00250.1 - [+] show detail - DNA-binding storekeeper protein-related transcriptional regulator
        Distance: -861; Region: promoter
      • AT4G00260.1 - [+] show detail - Transcriptional factor B3 family protein
        Distance: -144; Region: promoter
    Flanking Genome Sequence: GT81 - 3-prime edge 
    ATTTTACCGA CCGTTACCGA CCGTTTTCAT CCCTATCTTC AATGGTCTCT 
    TCTTGGGCAT ATCAATGGTC TCTCATAGTT TCAACAACAC CAATAAACTG 
    TCATCTTCAA GCTGGAGTTT ATTACACTCG TTCCTTCAAG AAACTGTACC 
    GTCGACTTTC AGATTTAGCC ATTTAGGACT TCTCAAGGTT TTGAAAATGG 
    CGCATCAACA TTTCTTCAAG CCTCTTCTTC CTGGCTTCCA CGCCTCCTTG 
    GTACTCTCTT TCTCGCTCTT TCCCTTCATC TCACTCG

AT4G00250.1

Model type
Protein coding
Short Description
DNA-binding storekeeper protein-related transcriptional regulator
Computational Description
DNA-binding storekeeper protein-related transcriptional regulator; FUNCTIONS IN: transcription regulator activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF573 (InterPro:IPR007592); BEST Arabidopsis thaliana protein match is: DNA-binding storekeeper protein-related transcriptional regulator (TAIR:AT4G00238.1); Has 626 Blast hits to 580 proteins in 96 species: Archae - 0; Bacteria - 6; Metazoa - 135; Fungi - 97; Plants - 294; Viruses - 0; Other Eukaryotes - 94 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00260.1

Model type
Protein coding
Short Description
Transcriptional factor B3 family protein
Computational Description
maternal effect embryo arrest 45 (MEE45); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, embryo development ending in seed dormancy; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: Transcriptional factor B3 family protein (TAIR:AT2G24645.1); Has 539 Blast hits to 263 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 539; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR