GT7842

CSHL Arabidopsis genetrap mutant lines

Original: GT7842

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT7842

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1503571 [Map]; Strand: c
      • AT1G05190.1 - [+] show detail - Ribosomal protein L6 family
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: GT7842 - 3-prime edge 
    CCATAACCAA TTCAACATTG CCATCGATTT AAAAAGATAA AAATAACCCA 
    TTCAAAGAGA TTCCTTATAC TTGGGAGGCT CATGAACACA GTTTATAGAG 
    ATTTTTGAGT AGAAAATGCC AAGTAAAGAG AGGGGAAACC CTAGCGGAAT 
    GAAGAAGCTC TATGGTTTGT AGTATATGAA AAGTACCTGG GTTGAAAAGA 
    TGAGACGAGT GAGGAAGCCA TTGATAGGAT TTGATGATGG AGCTCTAAGC 
    TCTGCTCCAG AAGGAGGATG AAGAGAAGAA GAAGAGCGTT TTATCCAGAA 
    AAGACTTATC CATCGTCAGC TTCTGTAATC CCCTCTTTCA AATCATTACT 
    TTCACGGCCC ATTAGCTCAC TATTTTCGGC CCATTACTTT TAACCATCGT 
    TCTATGGGCC AATTCATTAT TTGTGTAACC CATTTATCTA TATTGATCAT 
    GGCCTATTAT CTCACTGTTT CTAGGCCCAT TATTATTATA ACTGTTCACA 
    AAATTTACCC AATG

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1503365 [Map]; Strand: c
      • AT1G05190.1 - [+] show detail - Ribosomal protein L6 family
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: GT7842 - 5-prime edge 
    GGTTTTTAGC CATGGAAACT GAAGGGCTAC AAGATGTTTC TCTTCCTTAA 
    TCTAACGTTA TCTTTGTTCC AATAACAGTT TCTGTGTATT GGTTTAGATA 
    TATATCTGGT AGAGTTTTAC TTTCTTGACA TGTTTTATCT GAAGATAGAT 
    AGATAACTTC CCCTTTGTTT TAGGTCAGCA TTTTTGGGAG ATAGAAATGT 
    GTTCAAGGTC TCAAGCACAC CTTTTGCTCA AGTGGGTTAC TCCAGTAAGA 
    CCATTGAGTG CAAAGAATCA AGGATAGGAA AGCAACCGAT CGCTGTACCT 
    TCCAATGTAA CCATTGCATT GGAAGGTCAA GACTTGAAAG TGAAGGGTCC 
    ATTAGGAGAG CTGGCTTTAA CTTACCCACG CGAAGTTGAG CTTACAAAGG 
    AAGAATCCGG TTTCTTAAGG GTCAAAAAAA CCGTTGAAAC TAGAAGAGCC 
    AACCAAATGC ACGGCCTTTT CAGGTTACAA ACTACTCATC TT

AT1G05190.1

Model type
Protein coding
Short Description
Ribosomal protein L6 family
Computational Description
embryo defective 2394 (emb2394); FUNCTIONS IN: structural constituent of ribosome, rRNA binding; INVOLVED IN: translation, embryo development ending in seed dormancy; LOCATED IN: chloroplast stroma, chloroplast, large ribosomal subunit, membrane, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L6 (InterPro:IPR000702), Ribosomal protein L6, bacterial-type (InterPro:IPR019906), Ribosomal protein L6, alpha-beta domain (InterPro:IPR020040), Ribosomal protein L6, conserved site (InterPro:IPR002358); BEST Arabidopsis thaliana protein match is: ribosomal protein L6 family protein (TAIR:AT2G18400.1); Has 8498 Blast hits to 8498 proteins in 2848 species: Archae - 226; Bacteria - 5468; Metazoa - 15; Fungi - 189; Plants - 125; Viruses - 0; Other Eukaryotes - 2475 (source: NCBI BLink).
Link
InterPro Scan - TAIR