GT6983

CSHL Arabidopsis genetrap mutant lines

Original: GT6983

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT6983

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT6983 - 3-prime edge 
    CTAAATAAAG AAAAAAGAGC GAAGATGCAT GGGGATTACA

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 2369230 [Map]; Strand: w
      • AT5G07480.1 - [+] show detail - KAR-UP oxidoreductase 1
        Distance: 0; Region: intron3 (CDS)
      • AT5G07490.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -906; Region: promoter
    Flanking Genome Sequence: GT6983 - 3-prime edge 
    GGACCTAAAT AAAGAAAAAA GAGCGAAGAT GCATGGTGAT TACATTTTTT 
    GTTTTGGATC TAAACGTTTC AATTATTTCT GTTTACGTCT AAACCGGTAC 
    AGTTGAAACG CACCTTAAGT ACACCTGTGA CTTGTGGGAC ACCAACCCAA 
    CGGCCAGATC CACCGTGAGC CATTGGATCG AAGATCTTGA GACCGTCCAA 
    GTTCTGTAGA AGGAGGGTGA TGCAACTATA GTCTGAATGC GGCGGCAGGC 
    CTAGCGCCGT CTCAGGGTCC GGACAGGGTG GATAGCAGTT AACTGTCATG 
    ACTTGCATGC CGTTTTCGTC CATCCGAGAC GACAGGTAGT CTCTCCCTAG 
    ACCTATGCTT TCCGTTATTG CTCCCATTAA CTCTATCGAT AGTTTCCTCA 
    CT

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 2369668 [Map]; Strand: w
      • AT5G07490.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -468; Region: promoter
    Flanking Genome Sequence: GT6983 - 5-prime edge 
    TGATCAGGTC TTAGCCCGGG TTGGGTTGGT ACACAGAATG ACTCAGTCCA 
    TGTCCTTTTG GCGTTTAACC TGTGATAACG TGGAGATGTG TATCAGAGAC 
    ATATATACGT GTTAAATTGT AATGTAAGAT ATATAATTAG CATATCATTC 
    TCTCGATTTC CAAATATTCA TTGAGGTCAA AATACCACCC AAATATGTAT 
    GTGCGCGTCT AATTTAGATT ATTTTTATTA AATATTTTTC TATTTACAAA 
    TAGAAGAAAA GAAA

AT5G07480.1

Model type
Protein coding
Short Description
KAR-UP oxidoreductase 1
Computational Description
KAR-UP oxidoreductase 1 (KUOX1); FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity; INVOLVED IN: response to karrikin, flavonoid biosynthetic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT3G60290.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G07490.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G61630.1); Has 50 Blast hits to 50 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR