GT6461

CSHL Arabidopsis genetrap mutant lines

Original: GT6461

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile
  • small plants
Anatomical entity
/structure development stage
Phenotypes
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT6461

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23781081 [Map]; Strand: w
      • AT5G58890.1 - [+] show detail - AGAMOUS-like 82
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT6461 - 3-prime edge
    TTCCCTACAT CGTTGACGAA AGTCTCCACG TTGGTTTCTA TCCTGCAGCT 
    GGT
  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23781343 [Map]; Strand: w
      • AT5G58890.1 - [+] show detail - AGAMOUS-like 82
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT6461 - 5-prime edge
    ATNTCCAATT NNGCAGTATA TGNNTNCGGT TAATCATCAC ANCCATGGAC 
    ACACCATTCC CGCAGAATTT AATGGACCAA CAATTCATNN CNCTCTANNA
    TCATGAGCAG CCACAGTTTC AAGGCTTCCC TAATAATTTC AATAATATGG
    GTTTCTCGTT CTTCTCTCTC GACGANG

AT5G58890.1

Model type
Protein coding
Short Description
AGAMOUS-like 82
Computational Description
AGAMOUS-like 82 (AGL82); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: MADS-box transcription factor family protein (TAIR:AT5G55690.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR