GT6450

CSHL Arabidopsis genetrap mutant lines

Original: GT6450

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT6450

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 78088 [Map]; Strand: c
      • AT4G00180.2 - [+] show detail - Plant-specific transcription factor YABBY family protein
        Distance: -2704; Region: intergenic
      • AT4G00190.1 - [+] show detail - pectin methylesterase 38
        Distance: 2345; Region: intergenic
    Flanking Genome Sequence: GT6450 - 3-prime edge 
    ATAGGATGGC GTTGTCATCC CTAATCTCAA TCTACCTTAC ACACAAACAT 
    TATATATAAA AGAACNGAGC NAGCTGAGGC ATGAATAGNA TGACAGCGGC 
    ATGGTCTCTC TCTTTTTNTC NTTTTTTTTA CTTTTACGGC ACTTTCCCTC 
    TTGAGATATT TTTNGATCTA AGAATTTTCN GGACAAAACC TATTGAACAA 
    AAATCTTTTT TAAAAGAGAT ATTGAATTTT TCCACCGCCT GNATGGGAGA 
    NNNNANANAN NGACATTTCT CACACAAACA CCTTGGAAAA CAATCAACAT 
    CTGAGAGNAT ATATGCACGT GNATATGACT CTCTTTAGTT TCATTAACAT 
    TCCCGTTTCT AGCCACTTAT CTTCGCCATG CCACCGTTTT GCATTTCACT 
    TGACATCACA TCTTTTCAAN AACTCTAACA AACCANAACT ACTTTACATA 
    GTGGAATGGA ATAACATATT TCTAACTTGT TCATTTTATT CAATATATAT 
    TAATTGCTAA TTAGTTTCAT CTCNCC

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 77995 [Map]; Strand: c
      • AT4G00180.2 - [+] show detail - Plant-specific transcription factor YABBY family protein
        Distance: -2611; Region: intergenic
      • AT4G00190.1 - [+] show detail - pectin methylesterase 38
        Distance: 2438; Region: intergenic
    Flanking Genome Sequence: GT6450 - 5-prime edge 
    GGATCCNANN TGNGATGGTC AAATCGGGAN GATAAAACAG TATATGTTCT 
    TAAATAAGCT TCTCCTTTGT TCAACTTTTT TGCTTTCATT TCCGTTACAT 
    GATTTCGCGN TTAATTACTT TTTATAATTA GTCAACTTCG ACGCCTTGTG 
    TCGTCCTCGA TTTTAATGTT CTGTCTTTCT CTGCATTCAT AGTTTATCTT 
    ATTTCATNTC ANANCNTTAC TTCTTTTTTC TACAAACAAT AATTTCTAGA 
    CGAATTGAAA CAAATTTCCA AAACTTTATG AGTATATATA GGATATTTTT 
    AGTGGCAAAG GACGACTTAA ATTGTAACGA AAAGAATTTG AACTTTTTTC 
    CATTAGTCCC TACNATGAAT ATTTCATCCT ATAGAACATC ATATGAATTG 
    ATTACTTAAT GAAGTTAAAT TTTTGAAAAC TCTATTAGGG ACAATGTCCC 
    ACATCGGAAG TTGAGTAGGA TCTTAAGTGG TATATATAAG ATATGGGCCT 
    CTCCACCTAT TGCCAATTAG TTTTAGGTTG GAAGCCCACA GTCTGATATG 
    ATATCANAGC TCGATCCGCA CATACTCAAC CCGATCCACA TCGGTCCGGC 
    TCAATACTTG GCCCGCCGAT CCATGCCCAA ACATATCGAG ATCAATGGCT 
    AGAAGCGCCA TCATCTCGAG GGGGCGTATT AGGGACAATA TCCCACATCG 
    GAAGTTGAAT ANGATCTTAN GTGGTATATA TAANATATGA ACCTCTTCAC 
    CTATTGCCAA TTGGTTTTAN GTTGGAAGCC CACACTCTAA TATGGGTATC 
    ANAAGCCCGA TCCGCACATA CTCAACCCGG ATCCACNTCG GTCCGGGCCA 
    ATACTGGGCC CGCCGAACCA TGCCCAAACA TATCN

AT4G00180.2

Model type
Protein coding
Short Description
Plant-specific transcription factor YABBY family protein
Curator Summary
YABBY gene family member, likely has transcription factor activity, involved in specifying abaxial cell fate. Along with FIL, involved in patterning of the fruit. GUS reporter gene expression in seedlings is observed in the young leaves and as the leaf matures, expression is restricted to the abaxial tissues of leaves, expression is also observed on either side of the leaf margin in the younger tissues of leaf blades.
Computational Description
YABBY3 (YAB3); FUNCTIONS IN: protein binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: fruit development, abaxial cell fate specification, regulation of transcription; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), YABBY protein (InterPro:IPR006780); BEST Arabidopsis thaliana protein match is: Plant-specific transcription factor YABBY family protein (TAIR:AT2G45190.1); Has 465 Blast hits to 465 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 6; Plants - 438; Viruses - 2; Other Eukaryotes - 15 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00190.1

Model type
Protein coding
Short Description
pectin methylesterase 38
Computational Description
pectin methylesterase 38 (PME38); FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: flower, synergid; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily (TAIR:AT2G45220.1); Has 2963 Blast hits to 2921 proteins in 467 species: Archae - 10; Bacteria - 871; Metazoa - 1; Fungi - 198; Plants - 1837; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).
Link
InterPro Scan - TAIR