GT6056

CSHL Arabidopsis genetrap mutant lines

Original: GT6056

Phenotypes

Morphological phenotypes

Original description

  • tiny plants
Anatomical entity
/structure development stage		 Phenotypes
whole plant (PO:0000003)
  • decreased height (PATO:0000569)

Original: GT6056

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2912498 [Map]; Strand: w
      • AT3G09470.1 - [+] show detail - Major facilitator superfamily protein
        Distance: 0; Region: intron7 (CDS)
      • AT3G09470.2 - [+] show detail - Major facilitator superfamily protein
        Distance: 0; Region: intron7 (CDS)
    Flanking Genome Sequence: GT6056 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTATTGGTG AGAGAGTCAA 
    AGAGAGAGTA GCTGTGAAAT CATTCTGTTG TGCAATGACT GCTGGAAGGT 
    TGACCTCTGG TTTGTCATCG ATCACCTTCA TAGTTTCTGG TGGAGCTGTT 
    GCTCAACCTT CTGTGTATCT CTGGCTTCAT CTCTCT

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3130375 [Map]; Strand: w
      • AT3G10120.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT6056 - 5-prime edge 
    TCGTCATCTT CATCCCCAAG CCAAGCTTCT CTGTGGTCGT CTCTACTATC 
    TATTGCCCCA AGAGACTACC TCAATCAAGC GCATGAAGAA GACGATGAAG 
    AAAGTCAGGT TTGCAAATCC AGAGGTGGAA AAAGAAGAAC AAGAAGAAGA 
    TAGATTAACA GATTGTTGTG ACAATACCAA GGAGAAGTCT AATGGTGTTG 
    TGCGGGTGAA GATGGTTGTG AGTAAGCAAG AGCTGGAGAA ACTGCTTCAA 
    GGAGGTTCTG TACATGAGAT GGTTTATAGG ACCCTAGCTA AGGCAACATC 
    TGTGATGTTG ATCATCATGA TCATGCTGAT GATGATGAGT GTCATAGAGT 
    CTGGAAACCT TTGTTAGTAG CATTTCCTGA ATCTGATTAG CCTATTGGGT 
    GTACATATCT ACATATATAT GACATATACA TAGATAACAG AGACTCAAAG 
    CTTGTGAAAA GAGAGCATGT AATTCGCAGA AACACAAGGG TAAGACA

AT3G09470.1

Model type
Protein coding
Short Description
Major facilitator superfamily protein
Computational Description
Major facilitator superfamily protein; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); Has 797 Blast hits to 785 proteins in 150 species: Archae - 2; Bacteria - 12; Metazoa - 475; Fungi - 196; Plants - 54; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G09470.2

Model type
Protein coding
Short Description
Major facilitator superfamily protein
Computational Description
Major facilitator superfamily protein; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); Has 810 Blast hits to 800 proteins in 150 species: Archae - 2; Bacteria - 12; Metazoa - 490; Fungi - 196; Plants - 54; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G10120.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G03890.1); Has 57 Blast hits to 57 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 57; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR