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GT24425

CSHL Arabidopsis genetrap mutant lines

Original: GT24425

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT24425

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 33491 [Map]; Strand: c
      • AT4G00080.1 - [+] show detail - Plant invertase/pectin methylesterase inhibitor superfamily protein
        Distance: 0; Region: exon1 (CDS)
      • AT4G00085.1 - [+] show detail - pre-tRNA
        Distance: -309; Region: promoter
      • AT4G00090.1 - [+] show detail - Transducin/WD40 repeat-like superfamily protein
        Distance: -600; Region: promoter
    Flanking Genome Sequence: GT24425 - 5-prime edge 
    GCTCGGTACC TAGCAGCAGC GTAGTGCTCG ATGAAGGCAA GGGCATTACT 
    AGTTGTTTCC TCCACATTCT TCACTTTTCC TTTAATCGTA GCCTTAAGTT 
    TGCTCATCCT ACGTCCCGGG AACTGGCTCA CGCAAGTCTC GGCGTCTGTA 
    AGAGCTGTGC TTGTCCACGT CTGCAGGTTA TTTATATGCC AGTGTAGATC 
    CCCTTGGCTC TTTCCCTGTC TCCTGCTGAC TCTGTCTAGC TCCGCTATGG 
    CTAGACTCAA CTGGTTCACG CTGTCTCTTA TTTGGTCCAA GCAGTCGTGA 
    ACCGACGCGT AGTATTGGGG CCTCAACGTC GTCTCCAAGT TCTTAACCTC 
    TTTTAACAAG AACGCCTTTG TGTACTTAGC TCTATATAGG CTGGCTTTGA 
    GCGCAAATCG GGCCAGATCC CGTGGATTTT GCACCGCGCG TGAACGCACG 
    TAACGAGACA TCGACCGGAC GCATAGTTTC GGGTATAAGG TTGTTCGGCA 
    CCATGAGTGC ACGTAAGCCT TCGTGTCGTA GTCTTTTGAT GACGTGGCGG 
    TTGCCGAGAA GATGATGAGA GGGAACAGGG AGAGTAATAC AAAGAACAAT 
    TTGTTGTTAG CCGCCATGGC GAATTAGAGA ATTAACTGAG AGGATATGTA 
    GCTTAATCG

AT4G00080.1

Model type
Protein coding
Short Description
Plant invertase/pectin methylesterase inhibitor superfamily protein
Computational Description
unfertilized embryo sac 11 (UNE11); FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: double fertilization forming a zygote and endosperm; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily protein (TAIR:AT1G62770.1); Has 574 Blast hits to 571 proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 574; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00085.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Lys (anticodon: CTT)
Link
InterPro Scan - TAIR

AT4G00090.1

Model type
Protein coding
Short Description
Transducin/WD40 repeat-like superfamily protein
Computational Description
Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: nucleotide binding; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: periodic tryptophan protein 2 (TAIR:AT1G15440.2); Has 19942 Blast hits to 11235 proteins in 520 species: Archae - 42; Bacteria - 5638; Metazoa - 5982; Fungi - 4099; Plants - 1742; Viruses - 0; Other Eukaryotes - 2439 (source: NCBI BLink).
Link
InterPro Scan - TAIR