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GT24213

CSHL Arabidopsis genetrap mutant lines

Original: GT24213

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT24213

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 11800622 [Map]; Strand: c
      • AT1G32640.1 - [+] show detail - Basic helix-loop-helix (bHLH) DNA-binding family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT24213 - 5-prime edge 
    CTTTGATTGA AGGAACACAC GAAGGTTGGA CCCACTCTAT ATTCTGGCAA 
    CCGTCGTATG ATTTCTCCGG CGCTTCCGTG CTCGGATGGG GAGATGGTTA 
    TTACAAAGGT GAAGAAGATA AAGCAAACCC GAGACGGAGA TCGAGTTCGC 
    CGCCGTTTTC TACTCCGGCG GATCAGGAGT ACAGGAAAAA AGTGTTGAGA 
    GAGCTTAACT CGTTGATCTC CGGTGGTGTT GCTCCGTCGG ATGACGCTGT 
    TGATGAGGAG GTGACGGATA CGGAATGGTT TTTCTTGGTT TCGATGACGC 
    AAAGCTTCGC TTGCGGTGCG GGATTAGCTG GTAAAGCGTT TGCAACGGGT 
    AACGCGGTTT GGGTTTCCGG GTCAGATCAA TTATCCGGGT CGGGTTGTGA 
    ACGGGCTAAG CAAGGAGGAG TGTTTGGGAT GCATACTATT GCGTGTATTC 
    CTTCGGCGAA CGGAGTTGTG GAAGTCGGGT CAACGGAGCC GATCCGACAG 
    AGTTCGGACC TTATTAACAA GGTTCGAATT CTTTTCAATT TCGACGGCGG 
    AGCTGGAGAT TTATCGGGTC TTAATTGAAA TCTTGACCCG GATCAAGGGG 
    AAAACGACCC GTCTATGTGG ATTA

AT1G32640.1

Model type
Protein coding
Short Description
Basic helix-loop-helix (bHLH) DNA-binding family protein
Curator Summary
Encodes a MYC-related transcriptional activator with a typical DNA binding domain of a basic helix-loop-helix leucine zipper motif. Binds to an extended G-Box promoter motif. Its transcription is induced by dehydration stress and ABA treatment. Negative regulator of blue light
Computational Description
MYC2; FUNCTIONS IN: DNA binding, transcription activator activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 13 processes; LOCATED IN: nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: Basic helix-loop-helix (bHLH) DNA-binding family protein (TAIR:AT4G17880.1); Has 4078 Blast hits to 3762 proteins in 672 species: Archae - 2; Bacteria - 2; Metazoa - 761; Fungi - 108; Plants - 3150; Viruses - 25; Other Eukaryotes - 30 (source: NCBI BLink).
Link
InterPro Scan - TAIR