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GT24117

CSHL Arabidopsis genetrap mutant lines

Original: GT24117

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT24117

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 4111368 [Map]; Strand: w
      • AT3G12910.1 - [+] show detail - NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
        Distance: 720; Region: intergenic
      • AT3G12915.2 - [+] show detail - Ribosomal protein S5/Elongation factor G/III/V family protein
        Distance: -1261; Region: intergenic
    Flanking Genome Sequence: GT24117 - 3-prime edge 
    TTACCGACCG TTACCGACCG TTTTCATCCC TAGCTACTGG ATAACCAGTG 
    GAATCAGTCA GTAAAATGAT ATCAGACTAC TCGATTGCAT GATTTGAAGT 
    ATAAAGCTTA ACCTATCTAC AATTTTCACG CCAATTCCAA CTGTTTATTG 
    AACCATATCC TAGTCATGTC TCGGGAACAC CCAAAACCTC TGCAGTTTAA 
    TTCGATATAT ACTGACTCGA TTGTAAACTG AGCTAATCGT CTCTTAAATT 
    GACGAATTTA CGAAATCTGG AGATAAAAGG AACATGAACA ATCGTATTCA 
    TCATCCAAAC TACAAACAGA ATCTCGGCTC TTCGCTCTCA AAATTCGAAA 
    TTGGCAAGTA ACTCTGCTTT CTCTCCAATG GTTCTCTCCA ATATTTCTCT 
    CATCCGTGAC AAGACAAGAA GTTCCATCGT TTCATCTCAC TCGACA

AT3G12910.1

Model type
Protein coding
Short Description
NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
Computational Description
NAC (No Apical Meristem) domain transcriptional regulator superfamily protein; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 42 (TAIR:AT2G43000.1); Has 2920 Blast hits to 2915 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2920; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G12915.2

Model type
Protein coding
Short Description
Ribosomal protein S5/Elongation factor G/III/V family protein
Computational Description
Ribosomal protein S5/Elongation factor G/III/V family protein; FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation factor EFG/EF2, domain IV (InterPro:IPR005517), Translation elongation factor EFG/EF2, C-terminal (InterPro:IPR000640), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), Elongation factor G/III/V (InterPro:IPR009022), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: Ribosomal protein S5/Elongation factor G/III/V family protein (TAIR:AT1G56070.1).
Link
InterPro Scan - TAIR