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GT24116

CSHL Arabidopsis genetrap mutant lines

Original: GT24116

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT24116

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 270988 [Map]; Strand: c
      • AT4G00650.1 - [+] show detail - FRIGIDA-like protein
        Distance: 0; Region: exon3 (3UTR)
    Flanking Genome Sequence: GT24116 - 3-prime edge
    TTACCGACCG TTACCGACCG TTTTCATCCC TACTTGTGAG TAGTTACCTC 
    GGCCCGTCAA CATCTTTTCC TCATCGCTCA AGAAGATCCC CGGAATATAT
    GGTTCCACTT CCACATGGTG GGTTAGGAAG AAGTGTATAT GCATATGAAC
    ATCTGGCCCC AAATTCATAC TCTCCAGGTC ACGGACATAG ACTTCATCGA
    CAGTACTCTC CGTCTTTGGT TCACGGACAG AGACATCCAC TACAGTACTC
    TCCTCCAATT CATGGACAAC AACAGTTACC ATATGGTATA CAAAGGGTTT
    ACAGACATTC ACCATCTGAA GAAAGATATT TGGGTTTATC CAATCAAAGG
    TCTCCTCGCA GTAACTCATC ATTAGACCCC AAATAGGAGG AATGTAAATT
    TGTAACAAAG CTTTTTGTTT TTGCTTAAGT TAGTCATTTA TTTAACTCCC
    AACAGTCTCA AAATTTAATT TAATGTTTGG GGCTTAAGAA TGCAAATTTT
    TTTGCTCCTG TAATTGACAT TTAAAATGCT AATGTTATTG CTTCAAAGGT
    TTTAGTCAAC CTCAAATACA TCGATATCAC TATCTAAATA GACCTCTGGC
    TCTTGGTCAT CTGGATTCTC TTCA

AT4G00650.1

Model type
Protein coding
Short Description
FRIGIDA-like protein
Curator Summary
Encodes a major determinant of natural variation in Arabidopsis flowering time. Dominant alleles of FRI confer a vernalization requirement causing plants to overwinter vegetatively. Many early flowering accessions carry loss-of-function fri alleles .Twenty distinct haplotypes that contain non-functional FRI alleles have been identified and the distribution analyzed in over 190 accessions. The common lab strains- Col and Ler each carry loss of function mutations in FRI.
Computational Description
FRIGIDA (FRI); CONTAINS InterPro DOMAIN/s: Frigida-like (InterPro:IPR012474); BEST Arabidopsis thaliana protein match is: FRIGIDA-like protein (TAIR:AT5G48385.1); Has 841 Blast hits to 841 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 841; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR