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GT23936

CSHL Arabidopsis genetrap mutant lines

Original: GT23936

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT23936

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 126065 [Map]; Strand: c
      • AT2G01220.1 - [+] show detail - Nucleotidylyl transferase superfamily protein
        Distance: 0; Region: intron11 (CDS)
      • AT2G01220.2 - [+] show detail - Nucleotidylyl transferase superfamily protein
        Distance: 0; Region: intron11 (CDS)
    Flanking Genome Sequence: GT23936 - 3-prime edge 
    TACCGACCGT TACCGACCGT TTTCATCCCT AAGGAGAGGT GGCTTTGGGG 
    GAAAGACATG TTGAATCAAG TGGAGGATTA GTCGCTATGA GACTATCGTA 
    TGGAGAGAAT ATATTCGAAG AGATGCCGAG AATCTAGTCT CGTTCTTCAT 
    TTGTTTTGAT TGTTCATTCC TTGTAATTCC TAAACCTTGA GAGTCTTTAT 
    TAATCTATGG AACTTTATGA AAGATAGGCT TTAATCCAGT ATTTACATTG 
    AGATTCATAA TACTAAAGTC TATCAGTATT GTGTTGCATT CTGTTCTTAT 
    TATGGAATCC GGATCAATGG TATGAGCATT TGCACAGATG ACATCGAAAG 
    AGCATTGCAG AGTTGCCTGG GAAGCGTTTA AAGAGTGCGA ATATTTGTGA 
    ATTGTGACAG AGAAGCCTTG TTAGGTATTT ACGACTGTCA TTATACTATC 
    CAGGATTCTA CCTATAATTA GGGCTATTGA AAATAATGTA ATAGTGCCAA 
    ATGATCAGAT TGTGCTGGTT ATTTCACAGG TCTCTGCAAA TATAACAGTT 
    TAAGCTTCAT CTCACTCGA

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 4889016 [Map]; Strand: c
      • AT2G12160.1 - [+] show detail - pseudogene, hypothetical protein
        Distance: -84; Region: promoter
    Flanking Genome Sequence: GT23936 - 5-prime edge 
    TATTTATACG CAACAATCCC AAAGCACAAC CTTAACCCTT CATACGTGTG 
    CTCCATGTCA CCTCATCAAC CTCCTTACTT GTCATATCAT CACACGTGTG 
    TGCTACTTTG TCCTTCTTTG TCCTGAAATA CACCCTGTGT AACTTATCAA 
    TACCCCCGCC TTCGAAATGC AGCTTGTCCT CAAGCGTAAA TGCAGAACCT 
    TGCTTCTCCA TCTGTGCCAT GTAGAAAGGG ATTTGGTCTG AAGGGCACAC 
    CAAGTAACTA AGTTTTGAAG CCACATTATG TATCTAGTGA CCATGTTTCC 
    TCCAAAGAAC AATATAGAGT TGTTGTTGGT ATTTGTAGTC TTCGTGATAT 
    ACTTTTGAAA GAGACTGAAC ATTTCTAGGT TGGAGGCAAG AGTTGTCTTC 
    TGCAAAGGGT GTTGAACTTC TTTCAAGCGA TGATGAGCTT CGTTTGTTTG 
    TAATACAACT CTGCTATTCA TCTCTCTCTA CAAAAAACAC CTTCAACTAG 
    GCATTGTTGT TAGTACGGCC TGTCCTTCTG TTGAGATACT GTGATCCAAA 
    ATTGC

AT2G01220.1

Model type
Protein coding
Short Description
Nucleotidylyl transferase superfamily protein
Computational Description
Nucleotidylyl transferase superfamily protein; FUNCTIONS IN: nucleotidyltransferase activity; INVOLVED IN: biosynthetic process; LOCATED IN: chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Cytidylyltransferase (InterPro:IPR004820); BEST Arabidopsis thaliana protein match is: Nucleotidylyl transferase superfamily protein (TAIR:AT3G27610.2); Has 432 Blast hits to 425 proteins in 57 species: Archae - 6; Bacteria - 30; Metazoa - 0; Fungi - 7; Plants - 78; Viruses - 0; Other Eukaryotes - 311 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01220.2

Model type
Protein coding
Short Description
Nucleotidylyl transferase superfamily protein
Computational Description
Nucleotidylyl transferase superfamily protein; FUNCTIONS IN: nucleotidyltransferase activity; INVOLVED IN: biosynthetic process; LOCATED IN: chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Cytidylyltransferase (InterPro:IPR004820); BEST Arabidopsis thaliana protein match is: Nucleotidylyl transferase superfamily protein (TAIR:AT3G27610.1); Has 429 Blast hits to 422 proteins in 57 species: Archae - 6; Bacteria - 30; Metazoa - 0; Fungi - 7; Plants - 76; Viruses - 0; Other Eukaryotes - 310 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G12160.1

Model type
Pseudogene
Computational Description
pseudogene, hypothetical protein
Link
InterPro Scan - TAIR