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GT23859

CSHL Arabidopsis genetrap mutant lines

Original: GT23859

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT23859

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 28999522 [Map]; Strand: c
      • AT1G77170.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT23859 - 3-prime edge 
    GTATTTTACC GACCGTTACC GACCGTTTTC ATCCCTAAAG CTTGGAGATA 
    AGACCAGAGA AGAACATGTG TCTTTTTTGT TGTTGTCCTG ATTCAAAACT 
    AAGATTCTTA AGTACACAAA GTTGTAACAG TGAAAAAGAA ACTAAAATAA 
    GCTCAAAAGA TCTGATATTA TGAAGCTGAA AGATTGTATT CGAGTAGTTT 
    AAGAGACTCA CAACAACATA AATACTGATA ATCCAAAGCA AACTGTTTTA 
    ACAGATCCAA AATAACAAGT TATATATTGA AATCAAAGAT CAGTTACTGA 
    GCTTTTTCTT TGTCTTGACT TTTAACGCCG GTCACTGCGT TCGAAATTGA 
    TCTTGGTTCG ACCAGAACCG CCGTGGTCAT CGTCCCTTGA AGAGCTACCA 
    CCACCGCCAC TTGCTCTCAT AGTTCCACCA GATCCGATCT TGTCCAAAGG 
    TTTCTTACCC TTCTTTAAAT CAGAAACCCA CTTCTCAAGA CCGAAAGGAT 
    CTTGTTCCTC TTCCTTCTCA AACTCAAAAG GTCGGTCTCT CTTACTACCC 
    ACCCTCTCTG AAGCCCCTGT GAGAGCTTTG TCAGGCTTAA ACCTCTCAGT 
    ATTCTTGATC TTATCGAGCT GCTCATCAGC GTTTCCATAC ATTTCTTCAT 
    CGTTATCCTT CTTTGGCTTG TACAAAGTCG AAA

AT1G77170.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G21065.1); Has 36578 Blast hits to 13720 proteins in 224 species: Archae - 0; Bacteria - 18; Metazoa - 87; Fungi - 88; Plants - 35844; Viruses - 0; Other Eukaryotes - 541 (source: NCBI BLink).
Link
InterPro Scan - TAIR