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GT23790

CSHL Arabidopsis genetrap mutant lines

Original: GT23790

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT23790

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 176237 [Map]; Strand: c
      • AT2G01410.1 - [+] show detail - NHL domain-containing protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT23790 - 3-prime edge 
    TTACCGACCG TTACCGACCG TTTTCATCCC TACTCCGGGT ACTGTCTCGG 
    CGATCGCGAA GTTGATAACC TGCCGGTTAT CGGCGGAGGA GGGAATCAGC 
    ACTCCCAGGA CCAAGACGGC CACGAGAGTT GCGAAGACGA AGAAGGATCT 
    GTATCGAGTG GAACACGACG ACGACCTGTT CGCTTTCATC TGTGATTTCG 
    ATTTAGGACA ATAATGAATG GCTCATTTTT AGAAGAAACA AAACTTTGAT 
    GTATAATAAG ATATGACCAA GCCCATTTAT GTAATAAACG GGCCACATTT 
    TGCGTGTAGT ATATAAAATA GGGCCCATAA AGTTTATTGG CCTTCCTTCA 
    TCTCACTCGA

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 176143 [Map]; Strand: c
      • AT2G01410.1 - [+] show detail - NHL domain-containing protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT23790 - 5-prime edge 
    ACTAACCTGG GGATCCAAGG GACCAGCATT TTCTAGTCGG TTCTCTCCAC 
    AGCCGCACAA TTCATTCCGC CCCCGAAGCT GGAGTCCTCG AAACCCTAAT 
    CTCCGATCTC GATCTACCGG AGAACTCCAC TATCCTCGGT CTCGCCGTTG 
    ACTCTACTAA TCGCCGTCTC CTTGCCTGTA TCCAGAGTTT GCCGCCTCTC 
    CCTCCCTTCA GTGCCCTAGC CTCCTACGAT CTCCGCAGCG GAGGCCGTCG 
    TGTATTCCTC TCTCCTCTCC CGTCTCTTCC CGGAGACGAC GAAGACATCG 
    CTCGTGATGT CGCCAATGAC GTGGCGGTTG ATTTCAAAGG AAACGCTTAC 
    GTCACCAACT CAGCCAAAAA CTTCATCTGG AAAGTCGATC GCGACGGCGC 
    AGCTTCGATC TTCTCCAAAT CGCCGTTGTT CATCTCACTC GA

AT2G01410.1

Model type
Protein coding
Short Description
NHL domain-containing protein
Computational Description
NHL domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: Calcium-dependent phosphotriesterase superfamily protein (TAIR:AT2G16760.1); Has 137 Blast hits to 137 proteins in 39 species: Archae - 0; Bacteria - 57; Metazoa - 0; Fungi - 0; Plants - 76; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Link
InterPro Scan - TAIR