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GT23298

CSHL Arabidopsis genetrap mutant lines

Original: GT23298

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT23298

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22769368 [Map]; Strand: c
      • AT3G61520.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT23298 - 5-prime edge
    AGACCCGACT GTCACGACAT ATGGAGCGGT GATTGACGCT TATTGCTCAG 
    TCGGCGAATT AGACGAAGCA TTGAAGCTCT TTAAGGACAT GGGTTTGCAC
    TCAAAGGTCA ATCCGAACAC TGTAATATAC AACATTCTCA TAAACGCATT
    TTCTAAGCTG GGGAATTTCG GGCAAGCGCT CTCTCTGAAA GAGGAAATGA
    AGATGAAGAT GGTGAGACCT AATGTTGAAA CTTACAATGC CTTGTTTAAG
    TGTCTTAACG AGAAAACCCA AGGAGAGACA TTACTTAAAC TGATGGATGA
    GATGGTCGAA CAGTCTTGTG AACCAAATCA GATCACAATG GAGATTCTAA
    TGGAGCGTCT CTCAGGTTCT GATGAGTTAG TTAAGCTGAG GAAGTTTATG
    CAAGGCTACT CTGTTGCTTC GCTGACCGAG AAAGCTTCAC CTTTCGATGT
    CTTTAGCTTG GGATAATGTT CGTTTAGATA CAGTAACCAT TACTATAATG
    TTTTTAATAA TTTCTTGATT ATGCATTTTA TATAATTACA CAATCGCTAT
    TTATTTATGT ATGGTTATTT GCTAAATTTT GTTAAAATAA AAAATCCAGC
    TTTCTACAAT TCTCAATGCA GTAACTTAAG TAAGCCCATT TACTTATGGG
    CCTCGTGTAT TTGAGGTCCC CGAGACTTGG ACAGACACGT GTCTCGAATT
    GAATGGTT

AT3G61520.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G28460.1); Has 51879 Blast hits to 14395 proteins in 309 species: Archae - 5; Bacteria - 71; Metazoa - 859; Fungi - 887; Plants - 48189; Viruses - 0; Other Eukaryotes - 1868 (source: NCBI BLink).
Link
InterPro Scan - TAIR