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GT23141

CSHL Arabidopsis genetrap mutant lines

Original: GT23141

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT23141

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 10332144 [Map]; Strand: c
      • AT5G28360.1 - [+] show detail - ACS3 (1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE LIKE PSEUDOGENE); 1-aminocyc...
        Distance: -2442; Region: intergenic
      • AT5G28370.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 231; Region: intergenic
    2. Chromosome: 5; Position: 10377342 [Map]; Strand: w
      • AT5G28460.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 38; Region: intergenic
      • AT5G28463.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: -2104; Region: intergenic
    Flanking Genome Sequence: GT23141 - 5-prime edge 
    ATTTCTTGAT TCTGCATTTT ATATAATTAC CCCTTCAAAA TTTATTTATG 
    TATGGTTATT TGCTAAATTT TGTTAAAATA AAAAATCCAG CTTTCTACAA 
    TTCTCAATGC AGTAACTTAA GTAAGCCCAT TTACTTATGG GCCTCGTGTA 
    TTTGAGGTCC CCGAGACTTG GACAGACACG TGTCTTGAAT TGAATGGT

AT5G28360.1

Model type
Pseudogene
Short Description
ACS3 (1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE LIKE PSEUDOGENE); 1-aminocyclopropane-1-carboxylate synthase/ catalytic/ pyridoxal phosphate binding / transferase, transferring nitrogenous groups
Curator Summary
a pseudogene belonging to the 1-aminocyclopropane-1-carboxylate (ACC) synthase (S-adenosyl-L-methionine methylthioadenosine-lyase, EC 4.4.1.14) gene family. Transcript has not been detected.
Computational Description
1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE LIKE PSEUDOGENE (ACS3); FUNCTIONS IN: 1-aminocyclopropane-1-carboxylate synthase activity, pyridoxal phosphate binding, transferase activity, transferring nitrogenous groups, catalytic activity; INVOLVED IN: biosynthetic process; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Aminotransferase, class I and II (InterPro:IPR004839), 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: ACS1 (ACC SYNTHASE 1); 1-aminocyclopropane-1-carboxylate synthase (TAIR:AT3G61510.1); Has 826 Blast hits to 826 proteins in 226 species: Archae - 2; Bacteria - 146; Metazoa - 60; Fungi - 54; Plants - 536; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G28370.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G28460.1); Has 52907 Blast hits to 14569 proteins in 306 species: Archae - 7; Bacteria - 68; Metazoa - 890; Fungi - 845; Plants - 49290; Viruses - 0; Other Eukaryotes - 1807 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G28460.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G61520.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G28463.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR