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GT23100

CSHL Arabidopsis genetrap mutant lines

Original: GT23100

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT23100

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 11510787 [Map]; Strand: c
      • AT4G21660.1 - [+] show detail - proline-rich spliceosome-associated (PSP) family protein
        Distance: -946; Region: promoter
      • AT4G21660.2 - [+] show detail - proline-rich spliceosome-associated (PSP) family protein
        Distance: -945; Region: promoter
      • AT4G21670.1 - [+] show detail - C-terminal domain phosphatase-like 1
        Distance: -328; Region: promoter
    Flanking Genome Sequence: GT23100 - 5-prime edge
    CTTGTATGTA CTTTTATACT TGTGTTTCTG ATCTCATGTT TTGATTTTTA 
    CAGTGTCAAG GATTCATATA CCACAAGATA TTTATAGTTC ATCTAATTCT
    TTTTTTTTAG AAGATTATTT ATTCAAAAGA CATGATACTT TTGACATATA
    CTTGTTTCTT TATTTGTGAA ATATTTTTTA TCTACCAAGC ATGAATATTT
    TTTCACATAT ATCTTTCCCC TACTCTTTTC AATTTTTTCC TTATAAAATA
    ATAGTTTAGT AAATAAAAAA TGATTTATTT TGTTTTCTAA GATACACAAC
    TACGTAAAGG TAATTTTTTT TTATAGATAG TATTTTTTTC CTTGTTTAAA
    AATAACCGTT ACGTACAAAA GCCGTTACAA AATTCTTTCC TAAGGTTTTT
    TTTTCCCGGG TCCTTCCCAA AGGCCTAAGG AAAACATTTT TAAACCAAAA
    AGGGCCCAGG GAATTTGGTC CCATTTATAA GAAAAAAAAA AAACCCAAAA
    AAAAACCCGG GGGGCCGGGC CCCCTTTAAA AAAATCCCAA GGGGAAAAAA
    ATTTCCCCCA TTTCTGGAAA AACCAAATTT TTTCGAAAAA AAAAACAAAA
    CCTTTTAATT TTT

AT4G21660.1

Model type
Protein coding
Short Description
proline-rich spliceosome-associated (PSP) family protein
Computational Description
proline-rich spliceosome-associated (PSP) family protein; INVOLVED IN: mRNA processing; LOCATED IN: nucleus, chloroplast; CONTAINS InterPro DOMAIN/s: PSP, proline-rich (InterPro:IPR006568), Protein of unknown function DUF382 (InterPro:IPR007180); BEST Arabidopsis thaliana protein match is: pliceosome associated protein-related (TAIR:AT1G11520.1); Has 10486 Blast hits to 6076 proteins in 488 species: Archae - 22; Bacteria - 303; Metazoa - 4991; Fungi - 920; Plants - 455; Viruses - 239; Other Eukaryotes - 3556 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G21660.2

Model type
Protein coding
Short Description
proline-rich spliceosome-associated (PSP) family protein
Computational Description
proline-rich spliceosome-associated (PSP) family protein; INVOLVED IN: mRNA processing; LOCATED IN: nucleus, chloroplast; CONTAINS InterPro DOMAIN/s: PSP, proline-rich (InterPro:IPR006568), Protein of unknown function DUF382 (InterPro:IPR007180); BEST Arabidopsis thaliana protein match is: pliceosome associated protein-related (TAIR:AT1G11520.1).
Link
InterPro Scan - TAIR

AT4G21670.1

Model type
Protein coding
Short Description
C-terminal domain phosphatase-like 1
Curator Summary
encodes a a novel transcriptional repressor harboring two double-stranded RNA-binding domains and a region homologous to the catalytic domain of RNA polymerase II C-terminal domain phosphatases found in yeast and in animals that regulate gene transcription. Protein exhibits innate phosphatase activity in vitro. Mutants exhibit hyperresponsiveness to ABA, cold, and NaCl.
Computational Description
C-terminal domain phosphatase-like 1 (CPL1); FUNCTIONS IN: double-stranded RNA binding, phosphatase activity, nucleotide phosphatase activity; INVOLVED IN: abscisic acid mediated signaling pathway, negative regulation of transcription, response to abiotic stimulus; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Double-stranded RNA-binding (InterPro:IPR001159), NLI interacting factor (InterPro:IPR004274); BEST Arabidopsis thaliana protein match is: carboxyl-terminal domain (ctd) phosphatase-like 2 (TAIR:AT5G01270.2); Has 330 Blast hits to 317 proteins in 105 species: Archae - 0; Bacteria - 31; Metazoa - 57; Fungi - 81; Plants - 112; Viruses - 1; Other Eukaryotes - 48 (source: NCBI BLink).
Link
InterPro Scan - TAIR