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GT22585

CSHL Arabidopsis genetrap mutant lines

Original: GT22585

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT22585

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23247873 [Map]; Strand: c
      • AT3G62890.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT22585 - 5-prime edge 
    CGTCTCTAAA ATGGTGAAAT CTATTACAAT CTCTCACAAC AATTTCTCTA 
    CTAAAAAGCT TCGAGATCAT CTTCATTACA AGATGACAAT CTCCACAGAT 
    TCTGAGGTTC TTGATGATTC TCACTGGAGT TCCAGGCCTT GTCTTCATCA 
    AACAGAACGC AATAGCCAGT TTCTCACTGT GGTAAGACAA AGCTATCTCT 
    TCATCTCTCT CGA

AT3G62890.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Tetratricopeptide-like helical (InterPro:IPR011990); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G40405.1); Has 35241 Blast hits to 13566 proteins in 229 species: Archae - 0; Bacteria - 18; Metazoa - 37; Fungi - 30; Plants - 34726; Viruses - 0; Other Eukaryotes - 430 (source: NCBI BLink).
Link
InterPro Scan - TAIR