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GT22463

CSHL Arabidopsis genetrap mutant lines

Original: GT22463

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT22463

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 77895 [Map]; Strand: c
      • AT4G00180.2 - [+] show detail - Plant-specific transcription factor YABBY family protein
        Distance: -2511; Region: intergenic
      • AT4G00190.1 - [+] show detail - pectin methylesterase 38
        Distance: 2538; Region: intergenic
    Flanking Genome Sequence: GT22463 - 5-prime edge 
    TTTCGCGATT AATTACTTTT TATAATTAGT CAACTTCGAC GCCTTGTGTC 
    GTCCTCGATT TTAATGTTCT GTCTTTCTCT GCATTCATAG TTTATCTTAT 
    TTCATTTCAT CTCACTAGAC CATTTTTCTA CAAACAATAA TTTCTAGACG 
    AATTGAAACA AATTTCCAAA ACTTTATGAG TATATATAGG ATATTTTTAG 
    TGGCAAAGGA CGACTTAAAT TGTAACGAAA AGAATTTGAA CTTTTTTCCA 
    TTAGTCCCTA CGATGAATAT TTCATCCTAT AGAACATCAT ATGAATTGAT 
    TACTTAATGA AGTTAAATTT TTGAAAACTC TATTAGGGAC AATGTCCCAC 
    ATCGGAAGTT GAGTAGGATC TTAAGTGGTA TATATAAGAT ATGGGCCTCT 
    CCACCTATTG CCAATTAGTT TTAGGTTGGA AGCCCACAGT CTGATATGAT 
    ATCAGAGCTC GATCCGCACA TACTCAACCC GATCCACATC GGTCCGGCTC 
    AATACTTGGC CCGCCGATCC ATGTCCAAAC ATATCGAGAT CAATGGCTAG 
    AAGCGCCATC ATCTCGAGGG GGCGTATTAG GGACAATATC CCACATCGGA 
    ACTTGAATAG GATCTTAAGT GGTATATATA

AT4G00180.2

Model type
Protein coding
Short Description
Plant-specific transcription factor YABBY family protein
Curator Summary
YABBY gene family member, likely has transcription factor activity, involved in specifying abaxial cell fate. Along with FIL, involved in patterning of the fruit. GUS reporter gene expression in seedlings is observed in the young leaves and as the leaf matures, expression is restricted to the abaxial tissues of leaves, expression is also observed on either side of the leaf margin in the younger tissues of leaf blades.
Computational Description
YABBY3 (YAB3); FUNCTIONS IN: protein binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: fruit development, abaxial cell fate specification, regulation of transcription; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), YABBY protein (InterPro:IPR006780); BEST Arabidopsis thaliana protein match is: Plant-specific transcription factor YABBY family protein (TAIR:AT2G45190.1); Has 465 Blast hits to 465 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 6; Plants - 438; Viruses - 2; Other Eukaryotes - 15 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00190.1

Model type
Protein coding
Short Description
pectin methylesterase 38
Computational Description
pectin methylesterase 38 (PME38); FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: flower, synergid; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily (TAIR:AT2G45220.1); Has 2963 Blast hits to 2921 proteins in 467 species: Archae - 10; Bacteria - 871; Metazoa - 1; Fungi - 198; Plants - 1837; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).
Link
InterPro Scan - TAIR