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GT22336

CSHL Arabidopsis genetrap mutant lines

Original: GT22336

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT22336

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18275 [Map]; Strand: w
      • AT4G00050.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT22336 - 5-prime edge 
    GCTCGTCCCG TGGTTCCATC ATCGCTCCTC CAGGGCCGCG ATGGCAATGG 
    ACGCGCTTGT CCCTTGCTCC AACCTAGTAC ACGAGCAGCA GAGCAAGCCT 
    GGTGGCGTTG GCTCCACCCG GGTGGGGTCA TGTAGCGATG GTCGTACCAT 
    GGCCGGTGGA AAACGAGCAA GAGTGGCACC GGAGTGGAGC GGCGGCGGGA 
    GTCAGCGGCT GACCATGGAC ACTTACGACG TAGGTTTCAC CTCAACATCA 
    ATGGGCTCGC ACGATAACAC AATCGACGAT CATGACTCCG TCTGCCACAG 
    CCGCCCACAG GCAAGTCATC ATATATATTA ACTTGTTCTA GTTAATGATG 
    TCTCTAGCTT TATAAGTAAA TGATAATAAT TAAGGAAAAA CGATAGATGG 
    AGGACGAAGA AGAGAAGAAA GCCGGAGGAA AATCATCAGT TTCAACCAAG 
    AGAAGCAGAG CTGCTGCTAT TCATAACCAA TCCGAACGTG TAATGATTCA 
    CTCAACCATT ATTTTATTTT TCAAAAAAAG TTTCATCTCA CTCGACTACT 
    GTTACACATG CATGACCCCC TGGGTTTTAT CCTTGGTTGA TTTTATTACA 
    GAAGAGGAGA GATAAAATCA ATCAAAGGAT GAAGACTTTG CAAAAACTGG 
    TTCCCAATT

AT4G00050.1

Model type
Protein coding
Short Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description
unfertilized embryo sac 10 (UNE10); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: double fertilization forming a zygote and endosperm, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: phytochrome-interacting factor7 (TAIR:AT5G61270.1); Has 3766 Blast hits to 3760 proteins in 208 species: Archae - 0; Bacteria - 0; Metazoa - 365; Fungi - 50; Plants - 3342; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
Link
InterPro Scan - TAIR