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GT22328

CSHL Arabidopsis genetrap mutant lines

Original: GT22328

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT22328

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22744171 [Map]; Strand: w
      • AT3G61460.1 - [+] show detail - brassinosteroid-responsive RING-H2
        Distance: -1887; Region: intergenic
      • AT3G61470.1 - [+] show detail - photosystem I light harvesting complex gene 2
        Distance: -1482; Region: intergenic
    Flanking Genome Sequence: GT22328 - 5-prime edge 
    ACCCACAAAA GTATCAAAAA CTCGTAAAGC ATCAACGTTT GAGCTCATTT 
    TGTTGTTATA GTCAAAATCA TTCAAAGTTA TTTTGACAAG ACGTATTGGT 
    ACCATAATAA CGCATTAATA CACCTATACA TTTATAAATT ATTTTATTAG 
    TTATACACGA TGGTAGTACA AGAATACATG TATTGTAGTA GAATTTTGTA 
    ATCAATTAAT GTCACAAAAT TCAAACCAAA CTTCAATGAG AAAATTCATG 
    ATGCTCAACT AGTCAATGTG TATGTTATAC GACAAAAAAA ACATGCAATT 
    TGTCAATTAC CATCGATCCA AAAAAAAACC CTCTAAAACG ATAAAAGGAA 
    CGAAATAAGT ATGGAGAAGG GGGGGTTGAT TTGGAAATGT TATAATGAGG 
    CCGAGACAGC CACATGGCCC TATTGCTTGA ATGCATATCA TCTCATCTCC 
    TACCTCTCCC ACACTTCTCT TTGTCATGTC ACTGTTTAAT TTTTGAATAC 
    TCGCTCCATC TCTTTCTCGG GCCCCATGAT GCATCAATAC AAATATACTT 
    GATTGACGGT TTCTTGTTTG TTTCATAACT ATATACCCTA CTTTAAACCC 
    TATTTGATCC AATATTGATC TTAAATTTAA AATGATGTTT CGGGGGAATA 
    TGAGGTTCAA TCATTGCTTC ATTTGTAATT AA

AT3G61460.1

Model type
Protein coding
Short Description
brassinosteroid-responsive RING-H2
Curator Summary
Encodes a novel ring finger protein and forms an N-terminal hydrophobic domain and a C-terminal RING-H2 signature. Expression is down regulated by brassinolide.
Computational Description
brassinosteroid-responsive RING-H2 (BRH1); FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to brassinosteroid stimulus, response to chitin; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G63840.1); Has 6755 Blast hits to 6739 proteins in 268 species: Archae - 0; Bacteria - 0; Metazoa - 1714; Fungi - 535; Plants - 3593; Viruses - 29; Other Eukaryotes - 884 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G61470.1

Model type
Protein coding
Short Description
photosystem I light harvesting complex gene 2
Curator Summary
Encodes a component of the light harvesting antenna complex of photosystem I.
Computational Description
photosystem I light harvesting complex gene 2 (LHCA2); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: photosynthesis, light harvesting in photosystem I, photosynthesis; LOCATED IN: in 6 components; EXPRESSED IN: leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: photosystem I light harvesting complex gene 6 (TAIR:AT1G19150.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR