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GT22029

CSHL Arabidopsis genetrap mutant lines

Original: GT22029

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT22029

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 72844 [Map]; Strand: c
      • AT4G00170.1 - [+] show detail - Plant VAMP (vesicle-associated membrane protein) family protein
        Distance: -633; Region: promoter
      • AT4G00180.1 - [+] show detail - Plant-specific transcription factor YABBY family protein
        Distance: 0; Region: exon7 (CDS)
      • AT4G00180.2 - [+] show detail - Plant-specific transcription factor YABBY family protein
        Distance: 0; Region: exon6 (CDS)
    Flanking Genome Sequence: GT22029 - 5-prime edge 
    AAACATAATC CGAGATATCT TCTTTTGGTC TAATGAAGGA AGGAGAGGAT 
    GGGATGATGG GAAGAGAAGG GTTTTACGGT TCAGCTGCCA ACGTTGGGGT 
    GGCCCATAAC TAGCTACGAA GACTTTCCCA ATCTTTTGTA ATCTTTAAAA 
    TGTGGTTACT TTCAGCTCAA ACTTAACTTT CTTATTACTA TTTTATGATA 
    TTTGATAATC GATCAGGAGA CCTTTTTTTT TTTTTTAAAA AAATTTTTGG 
    AAATAAAAAA ATTTTTCCTT GGAATTGAAA AAAATTTGTT TTTCCCATTG 
    CCGGGGTAAT ATTTTAAAAA CAAAAACATG GCAAAACCAA ACCAACTTGG 
    CTTTACCAAA ACTTAAAGAA ACCGGTTTTT TTCCTTTAAA ATTCCCTATT 
    CCAATTGGAT TTTGAATAAA AAATTTGGGA AAAAACCTCC ATATTTTTTC 
    CCCCCAAAAA AATTTCACAA AAAAAAATGC CTTTTAAAAA AAAAAATTTC 
    CGGGGTTTTA AAAGGCCCCA AAAAAAAAAA GGGAACCTTT TTTTTGGGTT 
    TTTTTCCACC CGGGAACAAA AACCTTTATT TTTTTGGGCT AACCCCTAAC 
    CCATTAAAAA AATCCCGGCC AACCCGGAAA CCTCCAATCC TTTTACCTGG 
    CCTTTAAAAT TTAAAACTAC AAAAATTTAC CCCTTTTGGC CCAAAAAAAA 
    TTTTTTTTCT TTTTTT

AT4G00170.1

Model type
Protein coding
Short Description
Plant VAMP (vesicle-associated membrane protein) family protein
Computational Description
Plant VAMP (vesicle-associated membrane protein) family protein; FUNCTIONS IN: structural molecule activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: PapD-like (InterPro:IPR008962), Major sperm protein (InterPro:IPR000535), Vesicle-associated membrane protein (InterPro:IPR016763); BEST Arabidopsis thaliana protein match is: vesicle associated protein (TAIR:AT3G60600.1); Has 1100 Blast hits to 1071 proteins in 205 species: Archae - 0; Bacteria - 0; Metazoa - 430; Fungi - 141; Plants - 437; Viruses - 0; Other Eukaryotes - 92 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00180.1

Model type
Protein coding
Short Description
Plant-specific transcription factor YABBY family protein
Curator Summary
YABBY gene family member, likely has transcription factor activity, involved in specifying abaxial cell fate. Along with FIL, involved in patterning of the fruit. GUS reporter gene expression in seedlings is observed in the young leaves and as the leaf matures, expression is restricted to the abaxial tissues of leaves, expression is also observed on either side of the leaf margin in the younger tissues of leaf blades.
Computational Description
YABBY3 (YAB3); CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), YABBY protein (InterPro:IPR006780); BEST Arabidopsis thaliana protein match is: Plant-specific transcription factor YABBY family protein (TAIR:AT2G45190.1); Has 469 Blast hits to 469 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 6; Plants - 442; Viruses - 2; Other Eukaryotes - 15 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00180.2

Model type
Protein coding
Short Description
Plant-specific transcription factor YABBY family protein
Curator Summary
YABBY gene family member, likely has transcription factor activity, involved in specifying abaxial cell fate. Along with FIL, involved in patterning of the fruit. GUS reporter gene expression in seedlings is observed in the young leaves and as the leaf matures, expression is restricted to the abaxial tissues of leaves, expression is also observed on either side of the leaf margin in the younger tissues of leaf blades.
Computational Description
YABBY3 (YAB3); FUNCTIONS IN: protein binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: fruit development, abaxial cell fate specification, regulation of transcription; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), YABBY protein (InterPro:IPR006780); BEST Arabidopsis thaliana protein match is: Plant-specific transcription factor YABBY family protein (TAIR:AT2G45190.1); Has 465 Blast hits to 465 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 6; Plants - 438; Viruses - 2; Other Eukaryotes - 15 (source: NCBI BLink).
Link
InterPro Scan - TAIR