1. Home
  2. Mutant Lines
  3. GT22002

GT22002

CSHL Arabidopsis genetrap mutant lines

Original: GT22002

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT22002

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 33805 [Map]; Strand: w
      • AT4G00085.1 - [+] show detail - pre-tRNA
        Distance: 0; Region: exon1 (NonCoding)
      • AT4G00090.1 - [+] show detail - Transducin/WD40 repeat-like superfamily protein
        Distance: -286; Region: promoter
    Flanking Genome Sequence: GT22002 - 5-prime edge 
    CAAGCAAGAA AATACCTTTG CCGTATACAA AGATTATTAG CATTATTATC 
    GACATCACAG AATGTAGCCC GTCTAGCTCA GTTGGTAGAG CGCAAGGCTC 
    TTAACCTTGT GGTCGTGGGT TCGAGCCCCA CGGTGGGCGA TAGTGTTTTT 
    TCTGTTGTTT TTGTAAAGAG CTGAAGTTAT AAATGGGCTT TGAAATTAAT 
    GGGTTCGAAC ACCAACGGTG GGCCTTTTTT TCTTTCGATT TTTGTAAAGA 
    GCTGAATTTT AAAATGGGCT TTCAAATTAA TGGATCAGTG AGGTTAAAGC 
    CCATATTTTC TAATAAAATT AGAAGTAGTT ACAAACCCGA CCCGACCCGG

AT4G00085.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Lys (anticodon: CTT)
Link
InterPro Scan - TAIR

AT4G00090.1

Model type
Protein coding
Short Description
Transducin/WD40 repeat-like superfamily protein
Computational Description
Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: nucleotide binding; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: periodic tryptophan protein 2 (TAIR:AT1G15440.2); Has 19942 Blast hits to 11235 proteins in 520 species: Archae - 42; Bacteria - 5638; Metazoa - 5982; Fungi - 4099; Plants - 1742; Viruses - 0; Other Eukaryotes - 2439 (source: NCBI BLink).
Link
InterPro Scan - TAIR