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GT21966

CSHL Arabidopsis genetrap mutant lines

Original: GT21966

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT21966

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 11036032 [Map]; Strand: c
      • AT4G20480.1 - [+] show detail - Putative endonuclease or glycosyl hydrolase
        Distance: -158; Region: promoter
      • AT4G20490.1 - [+] show detail - transposable element gene
        Distance: -651; Region: promoter
    Flanking Genome Sequence: GT21966 - 5-prime edge 
    CAATTTAAGA AACTATGAAA GGTAATCTGC GACAGGGTAT CCTAATTCTC 
    CAATTGGTTC TAGCAAAGTG GAAAAATCAC TCAGTCTATT CATCTCGGTG 
    GACAAGAGAA GCCCATTAAA GTGAATCCCA TTAAAGCGAA GCCCATTGTG 
    AGTATATATA CTGCGGCGTC GGTATAATAT CCTCATTCAA AAATAAGAAA 
    ACCTAGTCGA CGATATCGAG ATCGATCCAA CCTGCTAACA TCTCTAAGGT 
    AAAATTCTCG GTCCTTATCT CATCATGTTT CTTTCAAAAC TGATCGGCTG 
    ATTGCATAGA TAGAACACGA TCTCATCATG TTTCTTTCAA AACTGATCGG 
    CTGATTGCAT AGATAGAACA CGATTAGCAG CTGTGTTCCT CTATATCTCC 
    CTCTCTCGAT CGGTGTGTCA ATTTATCTTT CTGATGTTTG ATTTTCTAAG 
    CAAAATTCAT CGACTGATTG CATAGATAGA AGAACCCTAC AACTTCTATA 
    GCAGCCGTGT TCCTCTCGGT TCTCTGATGT TTGACTGAAT TGAATTTGAT 
    TCTTTTTTTT TTAAGGTTTG ATTTTCCAAT GATGAGGGTG ATGGACCCTC 
    CGCCTACCGA GGAGGCAGCT TTGGCCCCAG TATCGGTCTT CTGGGACATA 
    AAATCGTTTC CGGTTCCCGA TGGCTATGAT GCTCGACTGG GGGGTCCGGG 
    TATCAAACGA AATTTGAGG

AT4G20480.1

Model type
Protein coding
Short Description
Putative endonuclease or glycosyl hydrolase
Computational Description
Putative endonuclease or glycosyl hydrolase; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G06810.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G20490.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family, has a 1.5e-29 P-value blast match to GB:AAD11615 prpol (gypsy_Ty3-element) (Zea mays)
Link
InterPro Scan - TAIR