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GT21215

CSHL Arabidopsis genetrap mutant lines

Original: GT21215

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT21215

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 467662 [Map]; Strand: c
      • AT4G01080.1 - [+] show detail - TRICHOME BIREFRINGENCE-LIKE 26
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT21215 - 5-prime edge
    ATGTCTCTTG TCATCACATT CAAGATTTTC AGAACTGTCT ATTGAATGGA 
    CGACCAGATG TGAATTATCT CTTCTGGAGA TGGAAGCCTC GTGATTGTGA
    TCTTCCTAGG TTTAGTCCAT CGCAGTTTTT TGCTTCAGTG AAGAACAAAT
    GGTGGGCTTT TATCGGTGAT TCCATAGCTC GTAACCATGT TCAGTCTCTC
    ATCTGTATTC TCTCTCAGGT TTGTTGATTC TTTTATTCAG AGAATGAGTT
    TGGTTTTTGT GTTAATGAAA GTTTCCTTAG ACTACAAGTA AGTAATCAAA
    GCCTTTGATT TAACTGTCTC AGGTGGAAGA AGTGGAGGAA ATCTATCACG
    ATAAGGAGTT CAGATCCAAG ATATGGAGAT TCCCTTCTCA CAACTTCACA
    TTATCAGTCA TTTGGTCTCC TTTCCTTCTC AAATCCGAAA CATCTAGCAA
    CTCGGATATT CATCTCACTC GA

AT4G01080.1

Model type
Protein coding
Short Description
TRICHOME BIREFRINGENCE-LIKE 26
Curator Summary
Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).
Computational Description
TRICHOME BIREFRINGENCE-LIKE 26 (TBL26); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: TRICHOME BIREFRINGENCE-LIKE 25 (TAIR:AT1G01430.1); Has 1341 Blast hits to 1324 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 1336; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Link
InterPro Scan - TAIR