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GT20852

CSHL Arabidopsis genetrap mutant lines

Original: GT20852

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT20852

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3627731 [Map]; Strand: w
      • AT1G10880.1 - [+] show detail - Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein
        Distance: -649; Region: promoter
      • AT1G10890.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: GT20852 - 5-prime edge 
    TTCATCCTAC TTTCTCTCTC TCGACAGCCC GACGAATTTT GGTTCGCTGC 
    TGCATAATTT TTACCCATAC ATCTTCCTCA TCTTCTCTCT CCGTGTTGAC 
    TCTTGAGGCG ATCCAACAAA CAACAACAAC AACGCCGCGA TTCTCGAGGG 
    TAAGTAGTCA TACGATTTCA GCTGATTTTC CAGGATGGTT TCAATTTTGG 
    GTTTATGCAG AAGATATTTA ATAGATTGTG TGTCCGCAAT CTGAAAGTTG 
    CTGCTAGGTT TCTGTTTGTT ATACCTATTT AGATTCTGAT AGGCTGTTTC 
    AATTATTAAC ATGAGTTGTT GAATCTGGAA TTTGCAGGAC CAATCCGTTC 
    AGAGAGATTA AAGCTGAGCT GAGCTTCTCC TTAGAAAGGA AGATACTGCT 
    TGTTCTACGG AATTTTGAGA GATGCCTCGG GACTTGTCAA GATCGAGGTC 
    ACCGTCTCCA TCACCTTCAC GTCGTAGAAA GCACTCGAGG TCTCCCGTAA 
    GGCAGAGGCA TAGCAGGAGG AGTAGAAGAG ACAGAAGCCC TTCTCCATAT 
    TC

AT1G10880.1

Model type
Protein coding
Short Description
Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein
Curator Summary
Putative role in response to salt stress. Mutants grow larger than the wild type under salt stress condition (Ann Stapleton and Ashley Green, 2009, personal communication).
Computational Description
Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein; INVOLVED IN: response to salt stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Core-2/I-Branching enzyme (InterPro:IPR021141); BEST Arabidopsis thaliana protein match is: Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (TAIR:AT5G16170.1); Has 696 Blast hits to 692 proteins in 56 species: Archae - 2; Bacteria - 7; Metazoa - 8; Fungi - 7; Plants - 576; Viruses - 0; Other Eukaryotes - 96 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G10890.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: petal, flower, leaf; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G13340.1); Has 11769 Blast hits to 8435 proteins in 698 species: Archae - 22; Bacteria - 971; Metazoa - 5937; Fungi - 1065; Plants - 592; Viruses - 101; Other Eukaryotes - 3081 (source: NCBI BLink).
Link
InterPro Scan - TAIR