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GT20611

CSHL Arabidopsis genetrap mutant lines

Original: GT20611

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT20611

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 55432 [Map]; Strand: c
      • AT4G00140.1 - [+] show detail - Calcium-binding EF-hand family protein
        Distance: -1983; Region: intergenic
      • AT4G00150.1 - [+] show detail - GRAS family transcription factor
        Distance: 1767; Region: intergenic
    Flanking Genome Sequence: GT20611 - 5-prime edge 
    AAAACTTCTA CGTCCAAAAT CTCAATCACT ACGAGAATTG TAACGTTGAT 
    ATTGGGCGTT AAATGTATAT GTATATAATT CCAAATTTCT AACAATTGGT 
    TTATAAACGA TGGCACTAAC ATAACCTCAT ATATT

AT4G00140.1

Model type
Protein coding
Short Description
Calcium-binding EF-hand family protein
Computational Description
embryo sac development arrest 34 (EDA34); INVOLVED IN: polar nucleus fusion; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: calmodulin-related (TAIR:AT1G73440.1); Has 80 Blast hits to 56 proteins in 14 species: Archae - 3; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00150.1

Model type
Protein coding
Short Description
GRAS family transcription factor
Computational Description
HAIRY MERISTEM 3 (HAM3); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: GRAS family transcription factor (TAIR:AT2G45160.1); Has 2283 Blast hits to 2233 proteins in 293 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 2281; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR