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GT20577

CSHL Arabidopsis genetrap mutant lines

Original: GT20577

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT20577

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 4111269 [Map]; Strand: c
      • AT3G12910.1 - [+] show detail - NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
        Distance: 621; Region: intergenic
      • AT3G12915.2 - [+] show detail - Ribosomal protein S5/Elongation factor G/III/V family protein
        Distance: -1360; Region: intergenic
    Flanking Genome Sequence: GT20577 - 5-prime edge 
    CTTTCTCCCT GATTTGAAGT ATAATGCTTA ACCTATCTAC AATTTTCACG 
    CCAATTCAAA CTGGTTATTG AACCATATCC TAGTCATGTC TCGGGAACAC 
    CCAAAACCTC TGCAGTTTAA TTCGATATAT ACTGACTCGA TTGTAAACTG 
    AGCTAATCGT CTCTTAAATT GACGAATTTA CGAAATCTGG AGATAAAAGG 
    AACATGAACA ATCGTATTCA TCATCCAAAC TACAAACAGA ATCTCGGCTC 
    TTCGCTCTCA GAATTCGAAA TTGGCAAGTA ACTCTGCTTT CTCTCCAATG 
    GTTCTCTCCA ATATTTCTCT CATCCGTGAC AAGACAAGAA GTTCCATCGT 
    TTCATCTCTC TCG

AT3G12910.1

Model type
Protein coding
Short Description
NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
Computational Description
NAC (No Apical Meristem) domain transcriptional regulator superfamily protein; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 42 (TAIR:AT2G43000.1); Has 2920 Blast hits to 2915 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2920; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G12915.2

Model type
Protein coding
Short Description
Ribosomal protein S5/Elongation factor G/III/V family protein
Computational Description
Ribosomal protein S5/Elongation factor G/III/V family protein; FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation factor EFG/EF2, domain IV (InterPro:IPR005517), Translation elongation factor EFG/EF2, C-terminal (InterPro:IPR000640), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), Elongation factor G/III/V (InterPro:IPR009022), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: Ribosomal protein S5/Elongation factor G/III/V family protein (TAIR:AT1G56070.1).
Link
InterPro Scan - TAIR