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GT20516

CSHL Arabidopsis genetrap mutant lines

Original: GT20516

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT20516

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 60534 [Map]; Strand: w
      • AT4G00150.1 - [+] show detail - GRAS family transcription factor
        Distance: -1248; Region: intergenic
      • AT4G00160.1 - [+] show detail - F-box/RNI-like/FBD-like domains-containing protein
        Distance: -2876; Region: intergenic
    Flanking Genome Sequence: GT20516 - 5-prime edge 
    TCCTACTTTC TCCCTGTTCA TTAGTATAAA CAATATCAGA TTCTGAATCT 
    ATCTTTTATA TGCGAATTAT GACCACACAA AAAAACAGAG AGTTCAGTTT 
    CTTGTATAGT AATTTTTAGT CCCATATTAT AATACTTGTT AAGTACCATA 
    AATATTTGAT GATAGATTGA TAGTTAACTT ACTTTATATA ACAACAAAAA 
    GTTAAAATGT TCATTTTTAA GATTTAATTA GTTTATATGT TTCCATGTGA 
    TTTGCTAACA ACTACTTCTC ACACTTTTCT TTCTCATACA AAATTATTAT 
    AAATCTTGAA ATGATCGCGA AACTGTATTA ATATATTTTC TTATTGACAT 
    AC

AT4G00150.1

Model type
Protein coding
Short Description
GRAS family transcription factor
Computational Description
HAIRY MERISTEM 3 (HAM3); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: GRAS family transcription factor (TAIR:AT2G45160.1); Has 2283 Blast hits to 2233 proteins in 293 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 2281; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00160.1

Model type
Protein coding
Short Description
F-box/RNI-like/FBD-like domains-containing protein
Computational Description
F-box/RNI-like/FBD-like domains-containing protein; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT3G52680.2); Has 2232 Blast hits to 2187 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2232; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR