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GT20400

CSHL Arabidopsis genetrap mutant lines

Original: GT20400

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT20400

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 11125186 [Map]; Strand: c
      • AT4G20740.1 - [+] show detail - Pentatricopeptide repeat (PPR-like) superfamily protein
        Distance: -965; Region: promoter
    Flanking Genome Sequence: GT20400 - 5-prime edge 
    TGTGCAAGGA GTTTGTCATG TTTTTTAAAG CAATGAAGAT TACTTCAAAG 
    AAGCTCATTC AAGCTCTGCT CAGTTTGATG CATCTAAGAA TAATACGAGA 
    CCATTAACAC AGTATGATTA CGGAGAACTA TGCAATGGAG CGACTGAAGA 
    ACTAAAGATT CAGAATATGC TAGTGGAAGT GTCCCTTTTC ATCTCCCTCC 
    ACCAGAAGCA CTATTCAAAG TGAGAGAAGG TATCACTTAT GGCATTCCCA 
    TATTTTAATT TGCTCAAAGA AAAATTAAAT ATTTCTTAGA ATCTCAGACC 
    ATTTCCAACG AAGAGTCTTT TGGCCATTTT CAACGGGAGA TCTAAGTCTA 
    AATATCCGAA AAGTAAATCA AAGTTGCCAA AAACCAATAG ACTCAGATCC 
    AAAATTGGAA TTTTAGACAA TGGTTTGAAT CGCGGACGTG TCACATCATA 
    AATGGTGAAT GTATTTGTAT TAGTAATGTT TA

AT4G20740.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR-like) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR-like) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G06710.1); Has 37034 Blast hits to 11477 proteins in 267 species: Archae - 10; Bacteria - 18; Metazoa - 245; Fungi - 473; Plants - 35231; Viruses - 0; Other Eukaryotes - 1057 (source: NCBI BLink).
Link
InterPro Scan - TAIR