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GT20193

CSHL Arabidopsis genetrap mutant lines

Original: GT20193

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT20193

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19641733 [Map]; Strand: c
      • AT2G48000.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: -930; Region: promoter
      • AT2G48010.1 - [+] show detail - receptor-like kinase in in flowers 3
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT20193 - 5-prime edge 
    TGGTGATGTC CATGCACCCC TGCGAAATCC ACGGCGTCTG GAAACCGCCT 
    GTGGATCGGA CGTCAAAGCG AGGGAGGAAA CCGGCGACCC AAGACTGGAG 
    AGCAGCCCAG CAAGAAGCAG CAGACTCAGG TGGCGGGAGA AAGGAACCCG 
    TCTGACGGAG ATGGTGAGAG TAGAGGAGGC GTAGCCCTTG GAGGAGGTAC 
    TGGCAGGTGG TGGCGCCATC GGGTTTCGGA CGCCGGAACG GTTCAAGGAC 
    GGAAAAGTCC AGAGGACACG TGGAGTTCTG AGCGGCGGAG AAAGAGGTGA 
    AGACAAAGAA GACGACGGCG ATTCGACGGA GAAACAACAT CTAATTCGAA 
    GAAAATTACT AATTGACAAT AAAGACATAA CATAACACTC TCTCTCTCTC 
    TCTCTCTTTG TTTCTTACAC TCATTGACCC ACTAGTAATA TTTTGGTCAT 
    TAGTTAAATA TATATATACT CTTAAGTGTA TTATTGATTG TGTTATTTAC 
    TTGATTTACT TGAAACGGTC AAAACATGTC ATGAACCTAA TTGAGTCTCA 
    TCCACGAAGT TGCACGAAAA CTTTCCTTTC ACTTTTTGTT TCATTTTCAT 
    ACTACTCAAT CAATAGTGGT AATCTGGTGA GAGATGATAA TATTTAAA

AT2G48000.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G30780.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G48010.1

Model type
Protein coding
Short Description
receptor-like kinase in in flowers 3
Curator Summary
receptor-like serine/threonine kinase (RKF3)
Computational Description
receptor-like kinase in in flowers 3 (RKF3); FUNCTIONS IN: receptor signaling protein serine/threonine kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G11050.1); Has 112833 Blast hits to 111726 proteins in 4356 species: Archae - 97; Bacteria - 12546; Metazoa - 41926; Fungi - 9138; Plants - 32648; Viruses - 383; Other Eukaryotes - 16095 (source: NCBI BLink).
Link
InterPro Scan - TAIR