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GT20019

CSHL Arabidopsis genetrap mutant lines

Original: GT20019

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT20019

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 7078375 [Map]; Strand: w
      • AT3G20290.1 - [+] show detail - EPS15 homology domain 1
        Distance: 0; Region: intron3 (CDS)
      • AT3G20290.2 - [+] show detail - EPS15 homology domain 1
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: GT20019 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTAGAAGCA GGTAAGGATT 
    TTGTGTTGAA ATTTATTACG TTGCTTACTT GTGGAACCTT TATTAATGGC 
    CATTATAATG ATTGACCAAG TTCATTTGGG GATGGAGTTG TATTAATGAG 
    TTAAGAGGAA ACACATAGGT GAATGCTTGA ATGGTTTTGA GTTCTAGGTT 
    TAATGGAGTT ACAAATAACA AGCCCTTGCG ATCATGCTTA ATTGCTCACT 
    TGGCAAAGCA TTTGAAGCCT TTTGTTGATT CA

AT3G20290.1

Model type
Protein coding
Short Description
EPS15 homology domain 1
Curator Summary
Encodes AtEHD1, one of the Arabidopsis Eps15 homology domain proteins involved in endocytosis (AtEHD2, At4g05520).
Computational Description
EPS15 homology domain 1 (EHD1); FUNCTIONS IN: GTP binding, GTPase activity, calcium ion binding; INVOLVED IN: endocytosis; LOCATED IN: endosome, microsome, membrane, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 2 (InterPro:IPR018249), EPS15 homology (EH) (InterPro:IPR000261), Dynamin, GTPase domain (InterPro:IPR001401), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048); BEST Arabidopsis thaliana protein match is: EPS15 homology domain 2 (TAIR:AT4G05520.1); Has 2747 Blast hits to 1834 proteins in 266 species: Archae - 2; Bacteria - 80; Metazoa - 1639; Fungi - 521; Plants - 217; Viruses - 0; Other Eukaryotes - 288 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G20290.2

Model type
Protein coding
Short Description
EPS15 homology domain 1
Curator Summary
Encodes AtEHD1, one of the Arabidopsis Eps15 homology domain proteins involved in endocytosis (AtEHD2, At4g05520).
Computational Description
EPS15 homology domain 1 (EHD1); FUNCTIONS IN: GTP binding, GTPase activity, calcium ion binding; INVOLVED IN: endocytosis; LOCATED IN: endosome, microsome, membrane, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 2 (InterPro:IPR018249), EPS15 homology (EH) (InterPro:IPR000261), Dynamin, GTPase domain (InterPro:IPR001401), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048); BEST Arabidopsis thaliana protein match is: EPS15 homology domain 2 (TAIR:AT4G05520.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR