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GT19979

CSHL Arabidopsis genetrap mutant lines

Original: GT19979

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT19979

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 75511 [Map]; Strand: w
      • AT4G00180.1 - [+] show detail - Plant-specific transcription factor YABBY family protein
        Distance: -127; Region: promoter
      • AT4G00180.2 - [+] show detail - Plant-specific transcription factor YABBY family protein
        Distance: -127; Region: promoter
    Flanking Genome Sequence: GT19979 - 5-prime edge 
    CTGCCTGCAT TCTCATTTAC TACCTTTTGA ACCGGTTTAT CTTCTTTATT 
    ATTCCTATCC ATCCTTTTTC TTTCTTCTAT ATATCAAACC GGAACTAGTC 
    TTTGTTTCTA TATAATCAGA TAAAAATTCT ACTTTGGGAC TAATTATCAT 
    TATCAAGTAC CATTGAATTA GTAGCCGATC GGTGAGGAAT AATAGATATA 
    AAGATTTCAA AGTTTTATAA CGACAAGATT TGTGCAGCAT CAAACATGTA 
    CATACGACAA ACATGCTAAC TTTATTTATT TTTTATCAAC TATTTAAACC 
    GCTTATATAT TTGCGGAAAA AACAAAACTT CAATTTGGCT AATAAGTGTC 
    GTGACACATG TATAGAAGTT TAACTATATC AACAGGGTTT AGGAGTTTAT 
    TTGAATTTCT AACATCCAAA AATTAAGATA ATATTAATTC ACATGTTAAA 
    TTTGGAATTG TTAAGGTTTT CTATTTTGGT TATGCATTTT GTTACATGGT 
    TTGTGACCTT GTGTCGTCGC AATGATGATA ATGCAACAGT GGAAATTTTT 
    TTTGATGATA ATTGATAATG CAATAACAGA AAAATATATT GGAATTGTTA 
    AGGTTTTCTA TTTTGGTTAA GCATTTTGTT ACATGGTTTG TGACTTTGTG 
    TCGTCGCACT AATGATAATA CAATAACAAA AAAAAATATC AACTAAAAGC 
    ATGAAAATAA AGAGGGAACA ATATGAAAAT ATACTTATGC ATGAGATAAA 
    GAGAGAACAA TATGAAAATA AGGTTGGTGT TGTTTTCATA GACGTAAA

AT4G00180.1

Model type
Protein coding
Short Description
Plant-specific transcription factor YABBY family protein
Curator Summary
YABBY gene family member, likely has transcription factor activity, involved in specifying abaxial cell fate. Along with FIL, involved in patterning of the fruit. GUS reporter gene expression in seedlings is observed in the young leaves and as the leaf matures, expression is restricted to the abaxial tissues of leaves, expression is also observed on either side of the leaf margin in the younger tissues of leaf blades.
Computational Description
YABBY3 (YAB3); CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), YABBY protein (InterPro:IPR006780); BEST Arabidopsis thaliana protein match is: Plant-specific transcription factor YABBY family protein (TAIR:AT2G45190.1); Has 469 Blast hits to 469 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 6; Plants - 442; Viruses - 2; Other Eukaryotes - 15 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00180.2

Model type
Protein coding
Short Description
Plant-specific transcription factor YABBY family protein
Curator Summary
YABBY gene family member, likely has transcription factor activity, involved in specifying abaxial cell fate. Along with FIL, involved in patterning of the fruit. GUS reporter gene expression in seedlings is observed in the young leaves and as the leaf matures, expression is restricted to the abaxial tissues of leaves, expression is also observed on either side of the leaf margin in the younger tissues of leaf blades.
Computational Description
YABBY3 (YAB3); FUNCTIONS IN: protein binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: fruit development, abaxial cell fate specification, regulation of transcription; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), YABBY protein (InterPro:IPR006780); BEST Arabidopsis thaliana protein match is: Plant-specific transcription factor YABBY family protein (TAIR:AT2G45190.1); Has 465 Blast hits to 465 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 6; Plants - 438; Viruses - 2; Other Eukaryotes - 15 (source: NCBI BLink).
Link
InterPro Scan - TAIR