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GT19945

CSHL Arabidopsis genetrap mutant lines

Original: GT19945

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT19945

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 1544393 [Map]; Strand: c
      • AT2G04450.1 - [+] show detail - nudix hydrolase homolog 6
        Distance: 0; Region: intron4 (CDS)
    Flanking Genome Sequence: GT19945 - 5-prime edge
    CAAGCACCTT CACATGGAAA TATCTCGTTA AGTTCTGTTC TCATCATTCC 
    AGAGGTCAAA ATACTTACTA GGCAATGAAC AAACAGAAGA CCTTAATGGC
    CTCTCTAGTC CAGTCACTGG CTACATTCCA CCAGAAATGC TTACACTTTT
    TCTAGTGATT TTGACTCTTT ATCAAGCCAT TGGGATTGAA AGAGATGGAC
    CAAGAAAAGA AGACGGTAAA GAGTTGTTAC CTCTTTGGTC TTCTTGTTTA
    GGACAAAGGC ACCAACTCCA ATACGATGAG ACGCATTGGC AGGAAGAGTA
    CTAGGAACAT CAGCGATCCA AGATGTAAGC ATGGTGTATT CCCTCTCGGC
    ATGGTGGCAC ACAAACCCTT CCTGTCAAAT TACCAACTAA ATTGCTGAAC
    AAGAACCAAT CCAAAACCAT AGTTACAAAC ATAAACATCT TACTTACTGC
    TTTTGCAGGT GCAATAAGAT TGTCAAGCCC ATCGGCAAGC TTTAACCATA
    TCCCCTTCGT CCCCTGCAAA TACATGTCTC AACTCATTGC CACTAGACTA
    CAAGTGTCTT CTAAAGAGTC TCTCTAAGTC TCAAATCTGA AGTGGTCTAT
    TAATGAAATA CCTGATTGCT CCAATACACA AGTGAAGCTC TCAGCTTTGG
    GACAAAATCC TCAATAGTCA TTGGTTCTGT CAAGTTCACC TTAACACCTC
    CATAATTATC TGCAACCCCC TTGAGTAAAA GGGACTCCTG AGCTTCACTG
    TCCATGCTAC AAAAAGAACC AATCCATATT CTAAGAAAAC TCAAG

AT2G04450.1

Model type
Protein coding
Short Description
nudix hydrolase homolog 6
Curator Summary
Encodes a protein with NADH pyrophosphatase activity. Although this protein was also shown to have ADP-ribose diphosphatase activity in vitro, mutant analyses suggest that NUDX6 is involved in NADH metabolism in vivo.
Computational Description
nudix hydrolase homolog 6 (NUDT6); FUNCTIONS IN: hydrolase activity, ADP-ribose diphosphatase activity, NAD or NADH binding, NADH pyrophosphatase activity; INVOLVED IN: response to other organism, positive regulation of salicylic acid mediated signaling pathway; LOCATED IN: cytosol; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: NUDIX hydrolase domain-like (InterPro:IPR015797), NUDIX hydrolase, conserved site (InterPro:IPR020084), Nudix hydrolase 6-like (InterPro:IPR003293), NUDIX hydrolase domain (InterPro:IPR000086); BEST Arabidopsis thaliana protein match is: MutT/nudix family protein (TAIR:AT4G12720.3); Has 2998 Blast hits to 2996 proteins in 719 species: Archae - 33; Bacteria - 1649; Metazoa - 236; Fungi - 25; Plants - 166; Viruses - 14; Other Eukaryotes - 875 (source: NCBI BLink).
Link
InterPro Scan - TAIR