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GT19798

CSHL Arabidopsis genetrap mutant lines

Original: GT19798

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT19798

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22773531 [Map]; Strand: c
      • AT3G61530.1 - [+] show detail - Phosphoenolpyruvate carboxylase family protein
        Distance: -175; Region: promoter
      • AT3G61530.2 - [+] show detail - Phosphoenolpyruvate carboxylase family protein
        Distance: 0; Region: exon1 (5UTR)
      • AT3G61540.1 - [+] show detail - alpha/beta-Hydrolases superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT19798 - 5-prime edge 
    CTCCGACTTC GATTCCCCAG CTACATCGAC GTAAACCGAT CCCGCTTCAG 
    CCATGGAGGT GATTACACGA CAAAATCTCC GGCGACGGGA GAAATCAATC 
    AAACCCGGAA CAGAACCAGA CAATCTTGAT GGAGTAGTAG ATAGAGAGAG 
    TACGAAAGCA TTCAACTTTG GAATCGGAGT CACCAGCGCG TGAGTCGCCA 
    ACATCGTTTT TATTCTTAAA AGAAAAATAT TTATCCAAAA GTCTTTAAAT 
    TTATAACTAA TTCCAAAATC GCTTTCATCA GCAACAACAA TGGCTGCTTC 
    GCTCGTCAGG AGTTGTTGCT CTCGTGCTTC GAGAGCCATC ACCACCGTCC 
    GGTTTATGAG CAACGTACCG GAGGACACGG TTTACGGAGG ACCGAAACCG 
    CAGAACTCGA ATCAGAGAGG GACTTTGACG CAATTGAGAC AGAAGCATCT 
    GAAAGGTGAG CCGATAACTA TGGTCACCGC CTACGATTAC

AT3G61530.1

Model type
Protein coding
Short Description
Phosphoenolpyruvate carboxylase family protein
Curator Summary
Encodes a ketopentoate hydroxymethyltransferase that appears to localize to the mitochondria. This protein is expected to play a role in pantothenate (vitamin B5) biosynthesis.
Computational Description
PANB2; CONTAINS InterPro DOMAIN/s: Pyruvate/Phosphoenolpyruvate kinase, catalytic core (InterPro:IPR015813), Ketopantoate hydroxymethyltransferase (InterPro:IPR003700); BEST Arabidopsis thaliana protein match is: ketopantoate hydroxymethyltransferase 1 (TAIR:AT2G46110.1); Has 7570 Blast hits to 7570 proteins in 2036 species: Archae - 128; Bacteria - 4151; Metazoa - 4; Fungi - 140; Plants - 59; Viruses - 0; Other Eukaryotes - 3088 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G61530.2

Model type
Protein coding
Short Description
Phosphoenolpyruvate carboxylase family protein
Curator Summary
Encodes a ketopentoate hydroxymethyltransferase that appears to localize to the mitochondria. This protein is expected to play a role in pantothenate (vitamin B5) biosynthesis.
Computational Description
PANB2; CONTAINS InterPro DOMAIN/s: Pyruvate/Phosphoenolpyruvate kinase, catalytic core (InterPro:IPR015813), Ketopantoate hydroxymethyltransferase (InterPro:IPR003700); BEST Arabidopsis thaliana protein match is: ketopantoate hydroxymethyltransferase 1 (TAIR:AT2G46110.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G61540.1

Model type
Protein coding
Short Description
alpha/beta-Hydrolases superfamily protein
Computational Description
alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: peptidase activity, aminopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S33, prolyl aminopeptidase (InterPro:IPR002410), Alpha/beta hydrolase fold-1 (InterPro:IPR000073); Has 1602 Blast hits to 1599 proteins in 535 species: Archae - 0; Bacteria - 1162; Metazoa - 5; Fungi - 126; Plants - 75; Viruses - 0; Other Eukaryotes - 234 (source: NCBI BLink).
Link
InterPro Scan - TAIR