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GT19609

CSHL Arabidopsis genetrap mutant lines

Original: GT19609

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT19609

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 258701 [Map]; Strand: c
      • AT2G01570.1 - [+] show detail - GRAS family transcription factor family protein
        Distance: -1151; Region: intergenic
      • AT2G01580.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 6343; Region: intergenic
    Flanking Genome Sequence: GT19609 - 3-prime edge
    CGGTAGAGGT ATTTTACCGA CCGTTACCGA CCGTTTTCAT CCCTTAACTT 
    AGGCCTATGC TAATCTACTG TTACTGTCAA AGTCTAAATA AAAAATATAA
    CTAGCCACTT AAAACTTACG AAAACAACAA AAACTAAATA AAACACGAAT
    GAAAACATTA AATTTAATGA TATTTGATGA CAATATTAAA GTTCCGACTA
    TATAAAAAAT CATCAAGCAA ACAAAACCTA ATAGTGTAAT ATTACTAAGC
    ATTCATGGGC TCGAAATACA ATTAATTAAA GGCAAAAAAA ATGGTGCGAC
    AAGAAAACCC GTTTTTAAGC ATAACAGCCG GCGTCCGTCG ACGTCAAATC
    ATTCAAAGAG ATTCCCGTTA TATTGCTTAA CGCCGTCATT AACGGCCTCT
    TTCTATCAAC TGTATTAAAA AAAAAAAAAA ATATTCATTT GAATCCTTCG
    GGAAACTCAA ACTGACAGCA CGTGATGGAT CCCCGTGTTA ATGGGTCCCA
    CAATATAGCT TTCAATAACT ATACCCCGTT GGAACTTTTG GGGTCTCTAC
    TAAAATTCAT GAGATTTAAA CCCGTGTCCT ATTATTATTA GATCTTAAAC
    GGAAGGGACC GAGTCTGCTT CCTTCTCTTT GACGGCCGTT TTTACGGATC
    CGTTTT
  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 258545 [Map]; Strand: w
      • AT2G01570.1 - [+] show detail - GRAS family transcription factor family protein
        Distance: -995; Region: promoter
    Flanking Genome Sequence: GT19609 - 5-prime edge
    GGATTCTATA ATTGGGTATT GAAAAATCAT CGGACCAATG GATTTTCAAT 
    TTTCGAGTTC TCTTTTATAG AAGTAACTTT CAAGTTTTAA ACGTTAATTA
    GGC
  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 258638 [Map]; Strand: c
      • AT2G01570.1 - [+] show detail - GRAS family transcription factor family protein
        Distance: -1088; Region: intergenic
      • AT2G01580.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 6406; Region: intergenic
    Flanking Genome Sequence: GT19609 - 5-prime edge
    ACTTTCTCCC TGAAGTAACT TTGTCAAGTT AAAAAGATCG AAAATACAAC 
    ATCTGAAATC TCGATATATA TTTATTATTA TTATGAAAGC TTTTAAAATT
    GTATGCATCT TGGAAATTAG AAGAAAAAAT ATGGCCTAAT TAACGTTTAA
    TACTTGAAAG TTACTTCTAT AAAAGAGAAC TAGAAAATTG AAAATACATT
    GGTCCGATGA TTTTTCAATA CCCAATTATA GAATCCCTTT TAGAGATTTT
    TTTTTGTACA TAAACTGAAC CTGTAGGACT TAAAGTTACT GTAAAATTAC
    TAGTATTGTA CTATTGTTAA AACCAAAATT TACTATTCTT TTCTCTGAAC
    AAACGCAATT TTAGATTTAT GTTTTCGATG GCTGAGCTTC AAACAACTTT
    TTGGAAAAAA TAAAATAATA ATCTCTTACA ATTCAAAAGG GGATTATATA
    TCATTATTTT TTTACATCCA AGACATATGG TTAAATTATT ATTACCATAG
    AGAAACTGGG AAGTAAAACA GTATCATGCT ATCATGAAGT AAGTTCAGCT
    TTTTAAGTTG AATTTAATTA TCCTCTGAAA AAGAGCATCT TCAGTTCCTC
    CATCAAAAGA ATCAACTAAA AAGCCCTAAA TCTCCTATTT TATAGATTTG
    ACAAAAGTTT AATGATTCTC TGAGACTTGA AATTACTTTC TTCATCAATT
    AAACTAAAAT TATTATATAG CTAAAAAAAC AAACTCATAA TATATCTA
  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 258620 [Map]; Strand: c
      • AT2G01570.1 - [+] show detail - GRAS family transcription factor family protein
        Distance: -1070; Region: intergenic
      • AT2G01580.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 6424; Region: intergenic
    Flanking Genome Sequence: GT19609 - 5-prime edge
    CTTTGTCAAG TTAAAAAGAT CGAAAATACA ACATCTGAAA TCTCGATATA 
    TATTTATTAT TATTATGAAA GCTTTTAAAA TTGTATGCAT CTTGGAAATT
    AGAAGAAAAA ATATGGCCTA ATTAACGTTT AATACTTGAA AGTTACTTCT
    ATAAAAGAGA ACTAGAAAAT TGAAAATACA TTGGTCCGAT GATTTTTCAA
    TACCCAATTA TAGAATCCCT TTTAGAGATT TTTTTTTGTA CATAAACTGA
    ACCTGTAGGA CTTAAAGTTA CTGTAAAATT ACTAGTATTG TACTATTGTT
    AAAACCAAAA TTTACTATTC TTCTCTCTCG A

AT2G01570.1

Model type
Protein coding
Short Description
GRAS family transcription factor family protein
Curator Summary
Member of the VHIID/DELLA regulatory family. Contains homopolymeric serine and threonine residues, a putative nuclear localization signal, leucine heptad repeats, and an LXXLL motif. Putative transcriptional regulator repressing the gibberellin response and integration of phytohormone signalling. DELLAs repress cell proliferation and expansion that drives plant growth. The protein undergoes degradation in response to GA via the 26S proteasome. RGA1 binds to PIF3 and inhibits its DNA binding activity and thus affects the expression of PIF3 regulated genes. RGA may be involved in reducing ROS accumulation in response to stress by up-regulating the transcription of superoxide dismutases. Represses GA-induced vegetative growth and floral initiation. Rapidly degraded in response to GA. Involved in fruit and flower development.
Computational Description
REPRESSOR OF GA1-3 1 (RGA1); CONTAINS InterPro DOMAIN/s: Transcriptional factor DELLA, N-terminal (InterPro:IPR021914), Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: GRAS family transcription factor family protein (TAIR:AT1G14920.1); Has 2724 Blast hits to 2666 proteins in 317 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 4; Plants - 2709; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01580.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G07510.2); Has 129 Blast hits to 129 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 129; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR