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GT19599

CSHL Arabidopsis genetrap mutant lines

Original: GT19599

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT19599

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23369062 [Map]; Strand: w
      • AT3G63240.1 - [+] show detail - DNAse I-like superfamily protein
        Distance: -1470; Region: intergenic
      • AT3G63250.1 - [+] show detail - homocysteine methyltransferase 2
        Distance: 1246; Region: intergenic
    Flanking Genome Sequence: GT19599 - 3-prime edge 
    CGGTAGAGGT ATTTTACCGA CCGTTACCGA CCGTTTTCAT CCCTAAGAGA 
    GAGGAGTCAT ACGCATTTAA CAAAATAAAA AACAATTAAA GCGTAATTAT 
    ATATACACTT ATTACAACTG GCACAGGGTT TCGTAGAGCC AGATAAAGTT 
    ATTGAGCCTT CAAAATCTTT ATTTTTTAAA AGCTTTTTTA ATTACAAAAT 
    AAAAAGAAAA TGGCTGTTGA AATGTACAAA ATGTACATTT TGAAAGAAAA 
    AAAACCACAA TTTACTAAAC CCAAGTATTG GACTGAACAA ACACAGACAC 
    GGTCTCCCAC ATGCAGCATG TGTCATTTTA ACTTTACCTT ACAAAATTAT 
    ATCGCATAAA TTCATCAAAC AATGTCTTAA AAGTGAACAC TCGATTTTAT 
    AATCTTGAAA AGTTAGATAA AGCAAAATCT TAGAGCATTG CCCCCCATAA 
    GTTAACCCCA CAAGATCATA TATTTTTCTG TCTTGTGTTT AAACAAATAG 
    GGTTATTTTC AGTTTGAAAG TTGACTCTGC CCAAACCCTA AGGCACAGTA 
    ATTCAAACCC ATCTTATGTT CGTATAAATT GTACCATATG TTACTCTCAT 
    ATGCT

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23369135 [Map]; Strand: w
      • AT3G63240.1 - [+] show detail - DNAse I-like superfamily protein
        Distance: -1543; Region: intergenic
      • AT3G63250.1 - [+] show detail - homocysteine methyltransferase 2
        Distance: 1173; Region: intergenic
    Flanking Genome Sequence: GT19599 - 5-prime edge 
    CTCTCTGATT AGAGAAACGT ACTGATTAGT TAAAGCCTTA AAGAGTTAAA 
    TACTTGATGG TAATAGCATA TACTTTATTC TGTCACGTCA ACACAAGTTC 
    ACCAAACAAT AAAGAATTCG AACATTGCAA TTAAAGATAC TTGAAAAACG 
    ACCTATTTAT TCGAATAAAA CGAATCATTT ATTAAACTGA TCAGAAAATA 
    ACTTTCAAGG CTTTGTACTC TGTTGTGAAT TATGTTTGTA TGTAAACAAA 
    GTAGTACTAT ATTGAATAGT AATAATACAA TCTGTTAATG AAGACGACTT 
    TGTAGAATAT CGGGCACATG TTGGGTATTT ATAAAGATTC ATGATAACAC 
    CTAGCTAGAA GAACATTAAG ATATGTTTTG GTAAGCCTGT TTTCTTGATT 
    ATAATAATTT ATCTCAATGA GTAGACAGAT TAGTACTTAA TTATTATCCT 
    CCAATCTTTG TTGCCTGGGA ATTTTTTTTC AGCATTATGT TAATCTTATG 
    TCAAGGTAGA TATAAATTCA TATACTCTCA TGAGTCATGA TGCAAAAGAA 
    ACTATAGTGA TAGATGCAAT GAAATAAAGA CGTTTTCGGG TTTTTATGGA 
    AGGAAGGATG GGTGGTGATG TGAAAGATTT TTA

AT3G63240.1

Model type
Protein coding
Short Description
DNAse I-like superfamily protein
Computational Description
DNAse I-like superfamily protein; FUNCTIONS IN: hydrolase activity, inositol or phosphatidylinositol phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Inositol polyphosphate related phosphatase (InterPro:IPR000300), Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: CVP2 like 1 (TAIR:AT2G32010.2); Has 2363 Blast hits to 2040 proteins in 223 species: Archae - 0; Bacteria - 0; Metazoa - 816; Fungi - 600; Plants - 662; Viruses - 0; Other Eukaryotes - 285 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G63250.1

Model type
Protein coding
Short Description
homocysteine methyltransferase 2
Curator Summary
Encodes a homocysteine methyltransferase (HMT). Among the three HMT coding genes in the genome, HMT2 is responsible for a significant proportion of HMT activity in the flower stalks and silique hulls. However, HMT2 does not significantly contribute to the total HMT activity in seeds.
Computational Description
homocysteine methyltransferase 2 (HMT2); CONTAINS InterPro DOMAIN/s: Homocysteine S-methyltransferase (InterPro:IPR003726); BEST Arabidopsis thaliana protein match is: homocysteine S-methyltransferase 3 (TAIR:AT3G22740.1); Has 6768 Blast hits to 6760 proteins in 1892 species: Archae - 4; Bacteria - 4264; Metazoa - 340; Fungi - 135; Plants - 163; Viruses - 0; Other Eukaryotes - 1862 (source: NCBI BLink).
Link
InterPro Scan - TAIR