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GT19415

CSHL Arabidopsis genetrap mutant lines

Original: GT19415

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT19415

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19556618 [Map]; Strand: c
      • AT2G47710.1 - [+] show detail - Adenine nucleotide alpha hydrolases-like superfamily protein
        Distance: -553; Region: promoter
      • AT2G47730.1 - [+] show detail - glutathione S-transferase phi 8
        Distance: 0; Region: exon1 (5UTR)
      • AT2G47720.1 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
        Distance: -6; Region: promoter
    Flanking Genome Sequence: GT19415 - 5-prime edge 
    TCGGGATGTG TCCTTCCCTG GAGATCCAGA ATTGATTTTC AGACCGACAA 
    CCTGAACAGT GGCCATGGGA ATCTGAAGAT TCTGGAGAAA TCTGAAATCA 
    GATAAAAAAG GTAAAGAGTA GCGTCAAGAC GAAGAAGAAT ATAACTAAAA 
    GCAATTTGGT TAGAGAGGTT TCTGTCGCAC TCCTGCTTTT GCTTCACGTC 
    GTCATATTAT TCTACAGCCG GCCGTCTCCT TTTTATTTTG TAATTGTTAT 
    CATCTGAGCC GGATTTTACC CAACTCAAAT CATTCCACTA TTTGAAATTA 
    GATTTTTCTT GTAATAGTTA AGTAAAATCG AAAGTTATCA AACCAATTCA 
    TCTCACTCGA CT

AT2G47710.1

Model type
Protein coding
Short Description
Adenine nucleotide alpha hydrolases-like superfamily protein
Computational Description
Adenine nucleotide alpha hydrolases-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to stress; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Universal stress protein A (InterPro:IPR006015); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G49050.1); Has 2830 Blast hits to 2747 proteins in 619 species: Archae - 112; Bacteria - 1833; Metazoa - 129; Fungi - 32; Plants - 667; Viruses - 0; Other Eukaryotes - 57 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47720.1

Model type
Protein coding
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT3G62770.1); Has 21 Blast hits to 21 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47730.1

Model type
Protein coding
Short Description
glutathione S-transferase phi 8
Curator Summary
Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).
Computational Description
glutathione S-transferase phi 8 (GSTF8); FUNCTIONS IN: glutathione transferase activity, glutathione binding; INVOLVED IN: in 8 processes; LOCATED IN: in 7 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: glutathione S-transferase PHI 2 (TAIR:AT4G02520.1); Has 15602 Blast hits to 15586 proteins in 1475 species: Archae - 0; Bacteria - 9018; Metazoa - 1960; Fungi - 883; Plants - 1109; Viruses - 0; Other Eukaryotes - 2632 (source: NCBI BLink).
Link
InterPro Scan - TAIR