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GT19233

CSHL Arabidopsis genetrap mutant lines

Original: GT19233

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT19233

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 75292 [Map]; Strand: c
      • AT4G00180.1 - [+] show detail - Plant-specific transcription factor YABBY family protein
        Distance: 0; Region: exon1 (5UTR)
      • AT4G00180.2 - [+] show detail - Plant-specific transcription factor YABBY family protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: GT19233 - 3-prime edge 
    TTACCGACCG TTACCGACCG TTTTCATCCC TACCAGAAGT TGAAGTCCAG 
    AGAGAGAAGG AAGAGAAAGA ACGGTGGAGA GGAAGATGTG GTTTAGAGAG 
    AGAGAGAGAG AGATATCTAT TTATGTAAAT ATGAAGAGAC ACTGTACCTA 
    AACAAATTGG CGACGTGTGA TGAAGAGGCC ATTGTAGAGA TAAGCTGCAT 
    ACCTGCATTC TCATTTACTA CCTTTTGAAC CGGTTTATCT TCTTTATTAT 
    TCCTATCCCT CCTTTTTCTT TCTTCTATAT CTCAAACCGG AACTAGTCTT 
    TGTTTCTATA TAATCAGATA AAAATTCTAC TTTGGGACTA ATTATCAATA 
    TCACGTACCA TTGAATTAGT ACCCGATCGG TGAGGAATAA TAGATATAAA 
    GATTTCAAAG TTTTATAACG ACGAGATTTG TGCAGCATCA AACATGTACA 
    TACGACAAAC ATGCTAACTT TATTTATTTT TTATCAACTA TTTAAACCGC 
    TTATATATTT GCGGAAAAAA CAAAACTTCA ATTTGGCTAA TAAGTGTCGT 
    GACACATGTA TAGAAGTTTA ACTATATCAA CGGGGTTTAA GAGTTTATTT 
    GAATTTCTCA CATCCAAAAA TTAAGATAAT ATTAATTCAC ATGTTAAATT 
    TGGAATTGTT AAGGTTTTCT ATTTTGGTTA TGCATTTTGT TACATGGTTT 
    GTGACCTTGT GTCGTCGCAG TGATGATAAT GCAACAGTGG AAATTTTTTT 
    TGATGA

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 75117 [Map]; Strand: c
      • AT4G00180.1 - [+] show detail - Plant-specific transcription factor YABBY family protein
        Distance: 0; Region: exon1 (5UTR)
      • AT4G00180.2 - [+] show detail - Plant-specific transcription factor YABBY family protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: GT19233 - 5-prime edge 
    ACTTCTATCT GAACATCGGT CAGTCATATC TTTTCAATCA AATCAAAGAC 
    CTCCTCTCTC TCTTACTCCT T

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 75224 [Map]; Strand: c
      • AT4G00180.1 - [+] show detail - Plant-specific transcription factor YABBY family protein
        Distance: 0; Region: exon1 (5UTR)
      • AT4G00180.2 - [+] show detail - Plant-specific transcription factor YABBY family protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: GT19233 - 5-prime edge 
    TCCTACTTTC TCCCTGACTT CAGGAGAAGT ACAAGACATT TATAAAGTAC 
    TGCTCATCAC CCAACACTAA ACACAATTGT CAAAAGGGTG TGGTGGAAGG 
    AGAATCTACT TCTATCTGAA CATCGATCAG TCATATCTTT TCAATCAAAT 
    CAAAGCCCTC CTCTCTCTCT TACTCCTTTT TTGTTTTAAA TCAAGAAAAA 
    GACTCCATGT CGAGCATGTC CATGTCGTCC TCCTCAGCTC CAGCTTTTCC 
    ACCGGACCAC TTCTCATCTA CGGACCAGCT CTGTTACGTC CATTGCAGCT 
    TCTGCGACAC TGTCCTTGCT GTAAATTTTG GATTATTCTT ATATCTCATC 
    TCAATATTTC AAATTTATAA CTCTAGCTAG GGTTTCACAT GAATTACTAG 
    TTAATTAATG TGTGATATTA ATTGGCAGGT GAGTGTTCCT CCGAGTAGTT 
    TGTTCAAGAC GGTGACGGTC AGATGCGGCC ACTGTTCGAA CCTTTTGTCG 
    GTGACCGTGA GCATGAGAGC TCTTCTTCTT CCATCCGTTT CCAACCTTGG 
    CCATTCCTTT TTACCTCCCC CTCCTCCTCC TCCTCCTCAA AATCTTTTGG 
    TACATCGGTT TCATTCATCG AAACAAATTA GGGTTCTTTC ATAAAAAAAA 
    CAGAGAGTAA TAATTAGGGC TTTTCT

AT4G00180.1

Model type
Protein coding
Short Description
Plant-specific transcription factor YABBY family protein
Curator Summary
YABBY gene family member, likely has transcription factor activity, involved in specifying abaxial cell fate. Along with FIL, involved in patterning of the fruit. GUS reporter gene expression in seedlings is observed in the young leaves and as the leaf matures, expression is restricted to the abaxial tissues of leaves, expression is also observed on either side of the leaf margin in the younger tissues of leaf blades.
Computational Description
YABBY3 (YAB3); CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), YABBY protein (InterPro:IPR006780); BEST Arabidopsis thaliana protein match is: Plant-specific transcription factor YABBY family protein (TAIR:AT2G45190.1); Has 469 Blast hits to 469 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 6; Plants - 442; Viruses - 2; Other Eukaryotes - 15 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00180.2

Model type
Protein coding
Short Description
Plant-specific transcription factor YABBY family protein
Curator Summary
YABBY gene family member, likely has transcription factor activity, involved in specifying abaxial cell fate. Along with FIL, involved in patterning of the fruit. GUS reporter gene expression in seedlings is observed in the young leaves and as the leaf matures, expression is restricted to the abaxial tissues of leaves, expression is also observed on either side of the leaf margin in the younger tissues of leaf blades.
Computational Description
YABBY3 (YAB3); FUNCTIONS IN: protein binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: fruit development, abaxial cell fate specification, regulation of transcription; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), YABBY protein (InterPro:IPR006780); BEST Arabidopsis thaliana protein match is: Plant-specific transcription factor YABBY family protein (TAIR:AT2G45190.1); Has 465 Blast hits to 465 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 6; Plants - 438; Viruses - 2; Other Eukaryotes - 15 (source: NCBI BLink).
Link
InterPro Scan - TAIR