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GT19204

CSHL Arabidopsis genetrap mutant lines

Original: GT19204

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT19204

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 12811228 [Map]; Strand: w
      • AT2G30010.1 - [+] show detail - TRICHOME BIREFRINGENCE-LIKE 45
        Distance: 1842; Region: intergenic
      • AT2G30020.1 - [+] show detail - Protein phosphatase 2C family protein
        Distance: -3182; Region: intergenic
    Flanking Genome Sequence: GT19204 - 5-prime edge
    TACTTTCTCC CTGGGAGGAG TCTTGTATGT GACTTAGTCT TCTGTTGAAC 
    ATAAACAGCA TTAAATCATA ACTAATAATC ATTACTATGA CTGATTGACT
    GATAATTGTA ATGATTTTCT AATTGTAAGT TATTTATGAT TGCAATTTCT
    AAAGTATATT GCCTAACCCA CGGAAATGCC ATCACATGTC GAAAGTAATA
    GTTTTATTTT GGTCTCGCTT GTTTCTAACG GAGTTTATGT ATATAGAGAT
    ATATATATGC CTATGATTAT TCTCTACAAA AATGAAAATC ACATTTCAAT
    ACTTTTTTAA AAATGTATTC TTAAAGAGAA GACGCAAAAA GTATTTAAGT
    GTACAGTGAA CAAATAAGAT TTTGTTTTAA GTGGTGAAAG AGAAAAATTA
    CACTATATTC CTAAATTAGT TTTCTTTCTT TCTTTTCGGT TTTTGAGGTC
    ATTTAATCAG ATAATTCGAA AATATTTAAA TAACTTATGT ACTAGGATAA
    AAAACAAACA TTTTTTTTTT TGT

AT2G30010.1

Model type
Protein coding
Short Description
TRICHOME BIREFRINGENCE-LIKE 45
Curator Summary
Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).
Computational Description
TRICHOME BIREFRINGENCE-LIKE 45 (TBL45); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF828) (TAIR:AT5G58600.1); Has 1337 Blast hits to 1318 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1337; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G30020.1

Model type
Protein coding
Short Description
Protein phosphatase 2C family protein
Curator Summary
Encodes AP2C1. Belongs to the clade B of the PP2C-superfamily. Acts as a MAPK phosphatase that negatively regulates MPK4 and MPK6.
Computational Description
Protein phosphatase 2C family protein; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT1G07160.1); Has 6969 Blast hits to 6779 proteins in 496 species: Archae - 2; Bacteria - 405; Metazoa - 1770; Fungi - 794; Plants - 2680; Viruses - 9; Other Eukaryotes - 1309 (source: NCBI BLink).
Link
InterPro Scan - TAIR