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GT19144

CSHL Arabidopsis genetrap mutant lines

Original: GT19144

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT19144

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT19144 - 3-prime edge 
    TCTTTCTAAC CCTCTACCCC

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 73848 [Map]; Strand: c
      • AT4G00180.1 - [+] show detail - Plant-specific transcription factor YABBY family protein
        Distance: 0; Region: intron3 (CDS)
      • AT4G00180.2 - [+] show detail - Plant-specific transcription factor YABBY family protein
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: GT19144 - 5-prime edge 
    CTACTTTATC CCTGAGTGAG AGGGAGAGGG AGAGAGAGAA AGGAGGAAGA 
    GTCGAAGAGT GATTGTTTTT TTTTTTAAAT GGGTTTTTTT GGGGAAATTT 
    TAAAATTTTT GGGGGGGGCC CCAAAAAACC CAAATTTTTT TTTTTTAAAA 
    AAGGGGTTGG TTTGGAAAAA AAAATAAAAA ATTTCCCTTT TTTTTTTTGG 
    GGAAAAACCC CCCCCCAAAA AGCCCAAAAA AGCCCCCTTG GGTACCCCCC 
    GTTTCCCAAG GAAAAAATTT TTTCCCTTTG CTAAAAAGGG GAAAAAAAAA 
    TTCCCCAAAA AACCCTTTTT CCCCAAAAAA AAAGGGGCCA AAAAGGGGCC 
    CAAATTTTTT TCCCTTTTGG GGTTAAAAAA AAAAAAGGGG GGCCAAAAGG 
    GAACCCCCCC CTTAAAGGGG GGGCCCCCCT TTTTTCCCCC CCAAAAAACC 
    CTTCGGGGGG GCCCCAAAAA AAAACCCTTT TCTTTTTTTT TCCCCCCCTA 
    AAAAAAAAAC CCCCCAGTTT CCCTTTGGGG TTTAACCCCA AAACCCACCC 
    CCCCCTTTTT CCCCCTTTTC TTTTGGAATG GAAAAAATAC CAAACCATTG 
    GGCGGACCCC TCCTAATTTT TGGGGGGCCC CCCTTGTTCC CCCC

AT4G00180.1

Model type
Protein coding
Short Description
Plant-specific transcription factor YABBY family protein
Curator Summary
YABBY gene family member, likely has transcription factor activity, involved in specifying abaxial cell fate. Along with FIL, involved in patterning of the fruit. GUS reporter gene expression in seedlings is observed in the young leaves and as the leaf matures, expression is restricted to the abaxial tissues of leaves, expression is also observed on either side of the leaf margin in the younger tissues of leaf blades.
Computational Description
YABBY3 (YAB3); CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), YABBY protein (InterPro:IPR006780); BEST Arabidopsis thaliana protein match is: Plant-specific transcription factor YABBY family protein (TAIR:AT2G45190.1); Has 469 Blast hits to 469 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 6; Plants - 442; Viruses - 2; Other Eukaryotes - 15 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00180.2

Model type
Protein coding
Short Description
Plant-specific transcription factor YABBY family protein
Curator Summary
YABBY gene family member, likely has transcription factor activity, involved in specifying abaxial cell fate. Along with FIL, involved in patterning of the fruit. GUS reporter gene expression in seedlings is observed in the young leaves and as the leaf matures, expression is restricted to the abaxial tissues of leaves, expression is also observed on either side of the leaf margin in the younger tissues of leaf blades.
Computational Description
YABBY3 (YAB3); FUNCTIONS IN: protein binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: fruit development, abaxial cell fate specification, regulation of transcription; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), YABBY protein (InterPro:IPR006780); BEST Arabidopsis thaliana protein match is: Plant-specific transcription factor YABBY family protein (TAIR:AT2G45190.1); Has 465 Blast hits to 465 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 6; Plants - 438; Viruses - 2; Other Eukaryotes - 15 (source: NCBI BLink).
Link
InterPro Scan - TAIR