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Mutant Lines
GT19134

GT19134

CSHL Arabidopsis genetrap mutant lines

Original: GT19134

Phenotypes

Morphological phenotypes

Original description

embryo lethal (unconfirmed)

Anatomical entity /structure development stage	Phenotypes
seed (PO:0009010)	present in fewer numbers in organism (PATO:0001997)

Original: GT19134

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

3 prime edge [+] show sequence
1. Chromosome: 5; Position: 3248759 [Map]; Strand: c
  - AT5G10330.2 - [+] show detail - histidinol phosphate aminotransferase 1
    Distance: 0; Region: intron5 (CDS)
  - AT5G10330.3 - [+] show detail - histidinol phosphate aminotransferase 1
    Distance: 0; Region: intron6 (CDS)
  - AT5G10330.1 - [+] show detail - histidinol phosphate aminotransferase 1
    Distance: 0; Region: intron6 (CDS)
2. Chromosome: 1; Position: 27068267 [Map]; Strand: w
  - AT1G71920.1 - [+] show detail - HISTIDINE BIOSYNTHESIS 6B
    Distance: 0; Region: intron6 (CDS)
  - AT1G71920.3 - [+] show detail - HISTIDINE BIOSYNTHESIS 6B
    Distance: 0; Region: intron6 (CDS)
  - AT1G71920.2 - [+] show detail - HISTIDINE BIOSYNTHESIS 6B
    Distance: 0; Region: intron5 (CDS)
Flanking Genome Sequence: GT19134 - 3-prime edge
```
ATAATCATGA CGGACTACTA AAAAGAATTT TTCCTTTCGA GTTGGTGAGA 
GTGGTGGTGT TTTACCTCCC ATCTGGATTG ATGGGAGAAG TTAGGAATAT 
GCATTTGGGT TTTTCTAGAA CTACAACTTC AGCGATGCAG GCTACATACA 
AGCTGAAATC GGGGTTTCTT GGAACTGTGA AACAGACAAA GACCAACAAG 
CTTAAGACTA TCCGTTCAGA GAGAGAGAGA GAAGGAACAT CGAACACAAG 
GAAACACGTG AAGAGCGGAA ATCTTTCACC TATAATGACA CCTGCTCCAT 
TCACAGCCGC ATCAAACACA TACGTTGAGA AAGTTGGAGG ACAATCTATA 
ATCTTCTCCC CAGGATCTAA CACGCATCTG CGAGAAACAG AGTTCTAGTC 
AGAAAATACG ATTCTGGTAG AAGCTCAATT GACTGAAAAA ATCAAATCTT 
GGAGCCATAC CTC
```

AT1G71920.1

Model type: Protein coding
Short Description: HISTIDINE BIOSYNTHESIS 6B
Curator Summary: Encodes a protein that is believed to act as a histidinol-phosphate transaminase involved in histidine biosynthesis. If the gene encoding the other protein shown to have this function, HISN6A (AT5G10330), is disrupted, a residual level of histidine biosynthesis continues, suggesting that HISN6B can somewhat compensate for the loss of HISN6A.
Computational Description: HISTIDINE BIOSYNTHESIS 6B (HISN6B); FUNCTIONS IN: histidinol-phosphate transaminase activity; INVOLVED IN: histidine biosynthetic process; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Aminotransferase, class I/classII (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Histidinol-phosphate aminotransferase (InterPro:IPR005861), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: histidinol phosphate aminotransferase 1 (TAIR:AT5G10330.2); Has 34816 Blast hits to 34816 proteins in 2921 species: Archae - 1024; Bacteria - 25539; Metazoa - 256; Fungi - 389; Plants - 456; Viruses - 0; Other Eukaryotes - 7152 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G71920.2

Model type: Protein coding
Short Description: HISTIDINE BIOSYNTHESIS 6B
Curator Summary: Encodes a protein that is believed to act as a histidinol-phosphate transaminase involved in histidine biosynthesis. If the gene encoding the other protein shown to have this function, HISN6A (AT5G10330), is disrupted, a residual level of histidine biosynthesis continues, suggesting that HISN6B can somewhat compensate for the loss of HISN6A.
Computational Description: HISTIDINE BIOSYNTHESIS 6B (HISN6B); FUNCTIONS IN: histidinol-phosphate transaminase activity; INVOLVED IN: histidine biosynthetic process; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Aminotransferase, class I/classII (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Histidinol-phosphate aminotransferase (InterPro:IPR005861), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: histidinol phosphate aminotransferase 1 (TAIR:AT5G10330.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G71920.3

Model type: Protein coding
Short Description: HISTIDINE BIOSYNTHESIS 6B
Curator Summary: Encodes a protein that is believed to act as a histidinol-phosphate transaminase involved in histidine biosynthesis. If the gene encoding the other protein shown to have this function, HISN6A (AT5G10330), is disrupted, a residual level of histidine biosynthesis continues, suggesting that HISN6B can somewhat compensate for the loss of HISN6A.
Computational Description: HISTIDINE BIOSYNTHESIS 6B (HISN6B); CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferase, class I/classII (InterPro:IPR004839), Histidinol-phosphate aminotransferase (InterPro:IPR005861), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: histidinol phosphate aminotransferase 1 (TAIR:AT5G10330.2); Has 35243 Blast hits to 35243 proteins in 2924 species: Archae - 1037; Bacteria - 25751; Metazoa - 263; Fungi - 377; Plants - 462; Viruses - 0; Other Eukaryotes - 7353 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G10330.1

Model type: Protein coding
Short Description: histidinol phosphate aminotransferase 1
Curator Summary: Encodes histidinol-phosphate aminotransferase that catalyzes the eighth step in histidine biosynthesis. Loss of function mutations are embryo lethal.
Computational Description: histidinol phosphate aminotransferase 1 (HPA1); FUNCTIONS IN: histidinol-phosphate transaminase activity; INVOLVED IN: histidine biosynthetic process, embryo development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: stem, fruit, root, flower; CONTAINS InterPro DOMAIN/s: Aminotransferase, class I/classII (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Histidinol-phosphate aminotransferase (InterPro:IPR005861), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: HISTIDINE BIOSYNTHESIS 6B (TAIR:AT1G71920.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G10330.2

Model type: Protein coding
Short Description: histidinol phosphate aminotransferase 1
Curator Summary: Encodes histidinol-phosphate aminotransferase that catalyzes the eighth step in histidine biosynthesis. Loss of function mutations are embryo lethal.
Computational Description: histidinol phosphate aminotransferase 1 (HPA1); FUNCTIONS IN: histidinol-phosphate transaminase activity; INVOLVED IN: histidine biosynthetic process, embryo development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: stem, fruit, root, flower; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferase, class I/classII (InterPro:IPR004839), Histidinol-phosphate aminotransferase (InterPro:IPR005861), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: HISTIDINE BIOSYNTHESIS 6B (TAIR:AT1G71920.2); Has 35250 Blast hits to 35250 proteins in 2924 species: Archae - 1034; Bacteria - 25749; Metazoa - 263; Fungi - 394; Plants - 462; Viruses - 0; Other Eukaryotes - 7348 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G10330.3

Model type: Protein coding
Short Description: histidinol phosphate aminotransferase 1
Curator Summary: Encodes histidinol-phosphate aminotransferase that catalyzes the eighth step in histidine biosynthesis. Loss of function mutations are embryo lethal.
Computational Description: histidinol phosphate aminotransferase 1 (HPA1); CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferase, class I/classII (InterPro:IPR004839), Histidinol-phosphate aminotransferase (InterPro:IPR005861), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: HISTIDINE BIOSYNTHESIS 6B (TAIR:AT1G71920.2); Has 35141 Blast hits to 35141 proteins in 2910 species: Archae - 1034; Bacteria - 25652; Metazoa - 263; Fungi - 377; Plants - 462; Viruses - 0; Other Eukaryotes - 7353 (source: NCBI BLink).
Link: InterPro Scan - TAIR