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GT19006

CSHL Arabidopsis genetrap mutant lines

Original: GT19006

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT19006

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 12890605 [Map]; Strand: w
      • AT4G25110.1 - [+] show detail - metacaspase 2
        Distance: -343; Region: promoter
      • AT4G25110.2 - [+] show detail - metacaspase 2
        Distance: -344; Region: promoter
      • AT4G25120.1 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
        Distance: -89; Region: promoter
    Flanking Genome Sequence: GT19006 - 3-prime edge 
    ATTCGAAATG ACTGAAATCA GTCAGACTGA AAAAACCTAC AGACAACGAA 
    ACCCCCTTTT TCTCCATAGA TGATA

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 12890605 [Map]; Strand: w
      • AT4G25110.1 - [+] show detail - metacaspase 2
        Distance: -343; Region: promoter
      • AT4G25110.2 - [+] show detail - metacaspase 2
        Distance: -344; Region: promoter
      • AT4G25120.1 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
        Distance: -89; Region: promoter
    Flanking Genome Sequence: GT19006 - 3-prime edge 
    ATTCGAAATG ACTGAAATCA GTCAGACTGA AAAAACCTAG AGACAACGAA 
    ACCCCCTTTT TCTCCATAGA TGATATTATT GGGCCTATGG CCCATCTGGG 
    CCTATGGCCC ATCTGGGCCC TTCGCTTTCG AGAATGAATT TTTTTTTTTT 
    CCTTTT

AT4G25110.1

Model type
Protein coding
Short Description
metacaspase 2
Computational Description
metacaspase 2 (MC2); FUNCTIONS IN: cysteine-type endopeptidase activity; INVOLVED IN: proteolysis; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C14, caspase catalytic (InterPro:IPR011600), Zinc finger, LSD1-type (InterPro:IPR005735); BEST Arabidopsis thaliana protein match is: metacaspase 1 (TAIR:AT1G02170.1); Has 7673 Blast hits to 3913 proteins in 538 species: Archae - 9; Bacteria - 793; Metazoa - 961; Fungi - 920; Plants - 3202; Viruses - 585; Other Eukaryotes - 1203 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G25110.2

Model type
Protein coding
Short Description
metacaspase 2
Computational Description
metacaspase 2 (MC2); FUNCTIONS IN: cysteine-type endopeptidase activity; INVOLVED IN: proteolysis; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, LSD1-type (InterPro:IPR005735), Peptidase C14, caspase catalytic (InterPro:IPR011600); BEST Arabidopsis thaliana protein match is: metacaspase 1 (TAIR:AT1G02170.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G25120.1

Model type
Protein coding
Short Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Curator Summary
Encodes a homolog of the yeast SRS2 (Suppressor of RAD Six-screen mutant 2) helicase. The Arabidopsis SRS2 is a functional 3
Computational Description
SUPPRESSOR OF RAD SIX-SCREEN MUTANT 2 (SRS2); CONTAINS InterPro DOMAIN/s: DNA helicase, UvrD-like, C-terminal (InterPro:IPR014017), Helicase, superfamily 1, UvrD-related (InterPro:IPR014016), DNA helicase, UvrD/REP type (InterPro:IPR000212); Has 26201 Blast hits to 22116 proteins in 2711 species: Archae - 259; Bacteria - 18888; Metazoa - 18; Fungi - 176; Plants - 81; Viruses - 13; Other Eukaryotes - 6766 (source: NCBI BLink).
Link
InterPro Scan - TAIR